| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,741,085 – 20,741,203 |
| Length | 118 |
| Max. P | 0.539843 |
| Location | 20,741,085 – 20,741,203 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.21 |
| Mean single sequence MFE | -39.13 |
| Consensus MFE | -36.72 |
| Energy contribution | -36.50 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539843 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20741085 118 - 23771897 GCUCAAGGAGCGUAUCGAGGCGUUCUGGCCGUGCAAUCUGCUGCAGCAGUUGUCUCGCGUCUAAGCCGGAGGUCACACACUCCUCCACUUUCCACCCUCGAAUGACGUCACAC--ACACU ......(..((((.((((((.(((..(((((.((((.((((....))))))))..)).)))..))).(((((.........))))).........))))))...))))..)..--..... ( -38.10) >DroSim_CAF1 19619 118 - 1 GCUCAAGGAGCGCAUCGAGGCGUUCUGGCCGUGCAAUCUGCUGCAGCAGUUGUCUCGCGUCUAAGCCGGAGGUCACACACUCCUCCACUUUCCACCCUCGAAUGACGUCACAC--ACACU ......(..(((((((((((.(((..(((((.((((.((((....))))))))..)).)))..))).(((((.........))))).........))))).))).)))..)..--..... ( -37.90) >DroYak_CAF1 31018 120 - 1 GCUCAAGGAGCGCAUCGAGGCGUUCUGGCCGUGCAAUCUGCUGCAGCAGUUGUCACGCGUCUAAGCCGGAGGUCACCCACUCCUCCACUUUCCACCCUCGAAUGACGUCACACACACACU ......(..(((((((((((.(((..((((((((((.((((....))))))).)))).)))..))).(((((.........))))).........))))).))).)))..)......... ( -41.40) >consensus GCUCAAGGAGCGCAUCGAGGCGUUCUGGCCGUGCAAUCUGCUGCAGCAGUUGUCUCGCGUCUAAGCCGGAGGUCACACACUCCUCCACUUUCCACCCUCGAAUGACGUCACAC__ACACU ......(..(((((((((((.(((..(((((.((((.((((....))))))).).)).)))..))).(((((.........))))).........))))).))).)))..)......... (-36.72 = -36.50 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:40 2006