| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,736,225 – 20,736,345 |
| Length | 120 |
| Max. P | 0.622075 |
| Location | 20,736,225 – 20,736,345 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.42 |
| Mean single sequence MFE | -36.58 |
| Consensus MFE | -27.78 |
| Energy contribution | -28.86 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.622075 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20736225 120 - 23771897 CUGUAUUCAUAGGAGCCGCAUUGGGCUUUAAUUGUAAGUUUUUGAGAGGGCUAAUGAUGUCCUCCUCCAUGCUUUCCUGCAUCAAAAGCGUCGCCCUGCGCUUGGUUUUAGUGCAGGCCC ...........((((((......))))))........((((((((((((((.......)))))).....(((......))))))))))).....((((((((.......))))))))... ( -39.40) >DroSec_CAF1 11686 120 - 1 CUGUAUUCGCAGGAGCCGCGUUGGGCUUUAAUUGUAAGUCCUUGAGGGGACUAAUGAUGUCCUCCUCCAUGCUUUCCUGCAUCAAAAGCGUCUCCCUGCGCUUGGUUUUAGUGCAGCCCC (((((((.(((((((..((((.((((((.......))))))..((((((((.......)))).)))).)))).))))))).....((((((......))))))......))))))).... ( -44.60) >DroSim_CAF1 14815 120 - 1 CUGUAUUCCCAGGAGCAGCGUUUGGCUUUAAUUGUAAGUCCUUGAGAGGACUAAUGAUGUCCUCCUCCAUGCUUUCCUGCAUCAAAAGCGUCUCCCUGCGCUUGGUUUUAGUGCAGCCCC (((((((((((((((.(((((..(((((.......)))))...((((((((.......))))).))).)))))))))))......((((((......))))))))....))))))).... ( -36.90) >DroEre_CAF1 13429 105 - 1 CUGUU------------GCGUUGGGCUUUAAAUGUAAAUCCUUGAGAGGACUAAUGAUGUCUUCCUCCAUGCUUUCCUGCAUCAAAAGCGUAUCCCUGCGUUUGGUUUUAGUGAAGG--- ...((------------(((((........)))))))..((((.(((((((.......))))))..((((((......))))...(((((((....)))))))))......).))))--- ( -23.20) >DroYak_CAF1 13499 120 - 1 AUGUUUCCCGGGGAGCCGCUUUGGGCUUUAUAUGUAAAUCCUUGAGAGGACUAAUGAUGUCCUCCUCCAUGCUUUCCUGCAUCAAAAGCGUCUCCCUGCGUUUGGUUUUAGUGUAGGCCC ........(((((((.(((((((((.((((....)))).)))(((((((((.......)))))).....(((......)))))))))))).))))))).....(((((......))))). ( -38.80) >consensus CUGUAUUCCCAGGAGCCGCGUUGGGCUUUAAUUGUAAGUCCUUGAGAGGACUAAUGAUGUCCUCCUCCAUGCUUUCCUGCAUCAAAAGCGUCUCCCUGCGCUUGGUUUUAGUGCAGGCCC ...........((((.(((...((((((.......))))))((((((((((.......)))))).....(((......)))))))..))).))))(((((((.......))))))).... (-27.78 = -28.86 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:37 2006