Locus 7770

Sequence ID 3L_DroMel_CAF1
Location 20,729,033 – 20,729,126
Length 93
Max. P 0.917721
window12650

overview

Window 0

Location 20,729,033 – 20,729,126
Length 93
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 84.24
Mean single sequence MFE -24.77
Consensus MFE -20.52
Energy contribution -20.22
Covariance contribution -0.30
Combinations/Pair 1.17
Mean z-score -2.58
Structure conservation index 0.83
SVM decision value 1.12
SVM RNA-class probability 0.917721
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20729033 93 - 23771897
ACAAUGGGCUACAAUGGAAGGCCAUUGAAAAACUAUUGAA-----------------------AACGAUGGGCUGGCCAGCCACAAAUGGUUAUGCAAGAAGUUACUGGUGAGCAC
.((((((.((........)).)))))).....((((((..-----------------------..))))))(((.(((((..((.....(.....).....))..))))).))).. ( -27.50)
>DroSec_CAF1 4485 93 - 1
ACAAUGCCCUACAAUGGAAGGCCAUUGAGAAACAAUUGCA-----------------------AACGAUGGGCUGGCCAGCCACAAAUGGUUAUGCAAGAAGUUACUGGUGAACAC
.....(((...((((((....))))))((.(((..(((((-----------------------(((.((.((((....))))....)).))).)))))...))).)))))...... ( -25.40)
>DroSim_CAF1 6829 93 - 1
ACAAUGGGCUACAAUGGAAGUCCAUUGAAAAACUAUUGCA-----------------------AACGAUGGGCUGGCCAGCCACAAAUGGUUAUGCAAGAAGUUACUGGUGAACAC
.(((((((((........)))))))))...((((.(((((-----------------------(((.((.((((....))))....)).))).)))))..))))............ ( -28.70)
>DroEre_CAF1 6161 93 - 1
ACAAUGGACUACAAUGGAAAGCCAUUGAAAAACCAUUGAA-----------------------AACGAUGGGCUGGCCAGCCACAAAUGGUUAUGCAAGAAGUUACUAGGGAACAC
.((((((....((((((....)))))).....))))))..-----------------------(((.....((((((((........)))))).)).....)))....(....).. ( -23.50)
>DroYak_CAF1 6379 93 - 1
ACAAUAGGCUACAAUGGAAAGCCAUUGAAAAACUAUUGAA-----------------------AACGAUGGGCUGGCCAGCCACAAAUGGUUAUGCAAGAAGUUACUAGGGAACAC
.((((((....((((((....)))))).....))))))..-----------------------(((.....((((((((........)))))).)).....)))....(....).. ( -22.60)
>DroAna_CAF1 5508 116 - 1
ACAAUGGAAUACAAUGGAAAACUAUUGAAAAACUAUUGAAAAACUAUUGAAAAACUAUUGAAAAACGAUGGGCUGGUCAGCCACAAAUGAUUAUGCAAGAAGUUACAAGUAAAUAG
.((((((....((((((....)))))).....)))))).....(((((......((((((.....))))))((((((((........)))))).))...............))))) ( -20.90)
>consensus
ACAAUGGGCUACAAUGGAAAGCCAUUGAAAAACUAUUGAA_______________________AACGAUGGGCUGGCCAGCCACAAAUGGUUAUGCAAGAAGUUACUAGUGAACAC
.((((((....((((((....)))))).....)))))).........................(((.....((((((((........)))))).)).....)))............ (-20.52 = -20.22 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:30 2006