Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,728,792 – 20,728,891 |
Length | 99 |
Max. P | 0.611211 |
Location | 20,728,792 – 20,728,891 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 77.14 |
Mean single sequence MFE | -10.70 |
Consensus MFE | 0.00 |
Energy contribution | 0.00 |
Covariance contribution | 0.00 |
Combinations/Pair | nan |
Mean z-score | -1.32 |
Structure conservation index | -0.00 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611211 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20728792 99 + 23771897 UGUUCGCCAGUGCUAAAUUGCAUAUUACCCAUCUGAAAUCUUGCUAAUCCACAUUUCCUUCAACCACAACUACUUCCUGGCUUUCCUGGCUAAUACUUU ((((.((((((((......)))....................((((...............................))))....))))).)))).... ( -12.28) >DroSec_CAF1 4253 90 + 1 UGU---------AUAAAUUGUAUAUUACCCAUCUGAAAUCUUGGUAAUCCACAUUUCCUUCAACCACAACUACUUCCUGGCUUUCCUGGCUAAUACUUU .((---------((....(((..((((((.............))))))..)))........................(((((.....)))))))))... ( -10.82) >DroSim_CAF1 6597 90 + 1 UGU---------AUAAAUUGUUUAUUACCCAUCUGAAAUCUUGGUAAUCCACAUUUCCUUCAACCACAACUACUUCCUGGCUUUCCUGGCUAAUACUUU .((---------((....(((..((((((.............))))))..)))........................(((((.....)))))))))... ( -10.82) >DroEre_CAF1 5921 82 + 1 UA-----C---UCUAAAUUGUAUCUUGUCCAUACGGAAUCUUGCUAAUCCACGCUUCCUUCAUCCACAACUACUUCC---------UGGAUAAUACUUU ..-----.---........((((..((((((...((((....((........))...................))))---------))))))))))... ( -7.90) >DroYak_CAF1 6137 85 + 1 GC-----CAGUGCUUAAUUGUUUUUUAUCCAUCUGAAAUCUAGCUAAUCCGCAUUUCCUUUAUACAGAAGUACUUCC---------UGGCUAAUACUUU ((-----((((((((...(((.(((((......)))))....((......))...........))).))))))....---------))))......... ( -11.70) >consensus UGU____C____CUAAAUUGUAUAUUACCCAUCUGAAAUCUUGCUAAUCCACAUUUCCUUCAACCACAACUACUUCCUGGCUUUCCUGGCUAAUACUUU ................................................................................................... ( 0.00 = 0.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:29 2006