| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,718,885 – 20,718,993 |
| Length | 108 |
| Max. P | 0.799818 |
| Location | 20,718,885 – 20,718,993 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 64.99 |
| Mean single sequence MFE | -22.71 |
| Consensus MFE | -10.38 |
| Energy contribution | -10.60 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.799818 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20718885 108 + 23771897 UCUUGCAUAUAAAA----AUAAUUCAAAUAUAGGAUAAAAAACCGCCAAGUCUCCCUUUGGCUAGAAAAUAUCCAAAGCGACAUUGUCACGAUGGCAGAUAAUAAAGUGAGC .((..(........----..............(((((.......((((((......)))))).......))))).........(((((.....)))))........)..)). ( -18.94) >DroSec_CAF1 6073 99 + 1 UCUUGCUUAGAA------------CAAAUGAAGGAUUAA-AAUCACCAAGUCCCGCUUUGGCUAGAAAAUAGCCAACGCGACACUGUCACGACGGCAGAUAAUGAAGUGAGC .((..(((....------------........(((((..-........)))))(((.(((((((.....))))))).)))...(((((.....)))))......)))..)). ( -28.20) >DroSim_CAF1 6050 107 + 1 UCUUGCUUAGAAAA----AUAAUUCAAAUGAAGGAUAAA-AACCGCCAAGUCCCGCUUUGGCUAGAAAAUAGCCAACGCGACACUGUCACGACGGCAGAUAAUGAAGUGAGC .((..(((......----((..(((....)))..))...-....(((.(((..(((.(((((((.....))))))).)))..)))((....)))))........)))..)). ( -28.00) >DroEre_CAF1 5997 108 + 1 UACGGCAUAUGCAU----ACAAUUCAAAUAAAGGGUCAAAAAACGCUAACUGCCAGUUUGGCUAAAAAGUAGCCAACGCGACACUGGUACAAUGGCAGAUAAUGAAGUGAGC ....((....))..----.((.((((.....((.((......)).))..(((((((((((((((.....))))))).)).((....))....))))))....)))).))... ( -24.20) >DroYak_CAF1 6358 89 + 1 UAC----------------------AAAUGAAG-GUCGAAGCCCGCUAAAUCCCAGUUUGGCUAGAAAAUAGCCAGUGCGACACUGUCACGAUGGCAGAUAAUGAAAUGAGC ...----------------------........-((((.((....))..........(((((((.....)))))))..)))).(((((.....))))).............. ( -19.40) >DroAna_CAF1 5911 89 + 1 UUUUUUUCACUAAAAUGUAUAGUUCAGAAGA---------------GAAAUCAUAAUUUAGCCGGAAAAAAGCCAACAGCGCUCUGCU--AACGGCAGAUAAUGAA------ ((((((((((((.......))))...)))))---------------))).((((.((((.((((......((((....).))).....--..)))))))).)))).------ ( -17.52) >consensus UCUUGCUUAGAAAA____AUAAUUCAAAUGAAGGAUAAA_AACCGCCAAGUCCCACUUUGGCUAGAAAAUAGCCAACGCGACACUGUCACGACGGCAGAUAAUGAAGUGAGC .........................................................(((((((.....))))))).......(((((.....))))).............. (-10.38 = -10.60 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:26 2006