Locus 7766

Sequence ID 3L_DroMel_CAF1
Location 20,718,320 – 20,718,437
Length 117
Max. P 0.699822
window12645

overview

Window 5

Location 20,718,320 – 20,718,437
Length 117
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 85.13
Mean single sequence MFE -45.95
Consensus MFE -37.26
Energy contribution -38.73
Covariance contribution 1.47
Combinations/Pair 1.14
Mean z-score -1.95
Structure conservation index 0.81
SVM decision value 0.35
SVM RNA-class probability 0.699822
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20718320 117 - 23771897
CAACAACAAUAGCAUCAUACACAACCUGGGCGCGGGGACGGAGGGCUUGCUCUCCUCCGUGAUUGCGUCGACGGGGACUCCUGGCAUGGGAUCCUCGCCCGUGCCCUCCAGAGCAUC
...........................((((((((((((((((((....))))))...((....)))))..((((((..((......))..)))))))))))))))........... ( -47.40)
>DroSec_CAF1 5527 117 - 1
CAACAACAAUAGCAACAUACACAACCUGGGCGCGGGCACGGAGGGCUUGCUGUCCUCCGUGAUUGCGUCGACGGGGACUCCUGGUAUGGGAUCCUUGCCCGUGCCCUCCAGAGCAUC
...........................(((((((((((((((((((.....)))))))))((((.(((...((((....))))..))).))))...))))))))))........... ( -51.10)
>DroSim_CAF1 5537 117 - 1
CAACAACAAUAGCAACAUACACAACCUGGGCGCGGGCACGGAGGGCUUGCUGUCCUCCGUGAUUGCGUCGACGGGGACUCCUGGUAUGGGAUCCUUGCCCGUGCCCUCCAGAGCACC
...........................(((((((((((((((((((.....)))))))))((((.(((...((((....))))..))).))))...))))))))))........... ( -51.10)
>DroEre_CAF1 5461 117 - 1
CAACAACAAUAGCAACAUACACAACCUGGGCGCGGGAACGGAGGGCUUGCUGUCCUCCGUGAUUGCGUCGACGGGAACUCCUGGAAUGGGAUCCUCACCAGUGCCCUCAAGAUCAUC
...........................((((((.((.(((((((((.....)))))))))((((.(((...((((....))))..))).))))....)).))))))........... ( -42.40)
>DroYak_CAF1 5777 117 - 1
CAACAACAAUAACAACAUACACAACCUGGGCGCGGGGACGGAGGGCUUGCUGUCCUCCGUGAUAGCGUCGACGGGAACUCCUGCAAUGGGAUCCUCGCCCGUGCCCUCAAGAUCAUC
...........................(((((((((.(((((((((.....)))))))))(((..(((.(.((((....))))).)))..)))....)))))))))........... ( -45.90)
>DroAna_CAF1 5389 106 - 1
--ACAACAAUAGCAACCUGCACAACCUGU---CGGGAGCAGGGGGCCUGGCCAGUUCUGUGAUUGCGUCGACGGGUACCCCAGGAAUGGGAUCCUCGCCAGCUGUGGCCAG------
--.........((..(((((....((...---.))..)))))..))(((((((...(((.....(((.....((((..((((....)))))))).))))))...)))))))------ ( -37.80)
>consensus
CAACAACAAUAGCAACAUACACAACCUGGGCGCGGGAACGGAGGGCUUGCUGUCCUCCGUGAUUGCGUCGACGGGGACUCCUGGAAUGGGAUCCUCGCCCGUGCCCUCCAGAGCAUC
...........................(((((((((.(((((((((.....)))))))))((((.(((...((((....))))..))).))))....)))))))))........... (-37.26 = -38.73 +   1.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:25 2006