| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,713,355 – 20,713,467 |
| Length | 112 |
| Max. P | 0.991716 |
| Location | 20,713,355 – 20,713,467 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 93.41 |
| Mean single sequence MFE | -28.47 |
| Consensus MFE | -27.09 |
| Energy contribution | -27.53 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.03 |
| Mean z-score | -3.70 |
| Structure conservation index | 0.95 |
| SVM decision value | 2.28 |
| SVM RNA-class probability | 0.991716 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20713355 112 + 23771897 UACAUUACACAUAUAUUUGAUGACACUUUUACCAGACGACGUUGAAUUUACUUAGUAUUUAACACAUUUUGUAAAAGUGUUAGGACGCAUAAAUAAGUUUUAAGUGGUCCAC- ....................((((((((((((.(((.(..(((((((.........))))))).).))).))))))))))))((((((.((((.....)))).)).))))..- ( -24.40) >DroSec_CAF1 611 108 + 1 UACAU-----AUAUAUUUGAUGACACUUUUACGAGACGACGUUGGAUUUACUUAUUAUUUAACACAUUUUGUAAAAGUGUUAGGACCCAUAAAUAAGUUUUAAGUGGUCCACA .....-----..........((((((((((((((((.(..(((((((.........))))))).).))))))))))))))))((((((.((((.....)))).).)))))... ( -30.50) >DroSim_CAF1 610 108 + 1 UACAU-----AUAUAUUUUAUGACACUUUUACGAGACGACGUUGGAUUUACUUAUUAUUUAACACAUUUUGUAAAAGUGUUAGGACCCAUAAAUAAGUUUUAAGUGGUCCACA .....-----..........((((((((((((((((.(..(((((((.........))))))).).))))))))))))))))((((((.((((.....)))).).)))))... ( -30.50) >consensus UACAU_____AUAUAUUUGAUGACACUUUUACGAGACGACGUUGGAUUUACUUAUUAUUUAACACAUUUUGUAAAAGUGUUAGGACCCAUAAAUAAGUUUUAAGUGGUCCACA ....................((((((((((((((((.(..(((((((.........))))))).).))))))))))))))))((((((.((((.....)))).).)))))... (-27.09 = -27.53 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:24 2006