Locus 7764

Sequence ID 3L_DroMel_CAF1
Location 20,708,814 – 20,708,934
Length 120
Max. P 0.534054
window12643

overview

Window 3

Location 20,708,814 – 20,708,934
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 79.86
Mean single sequence MFE -36.00
Consensus MFE -24.11
Energy contribution -26.49
Covariance contribution 2.38
Combinations/Pair 1.28
Mean z-score -1.59
Structure conservation index 0.67
SVM decision value 0.00
SVM RNA-class probability 0.534054
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20708814 120 - 23771897
UCGCUGACGUUGCUUGGGCGACUUGUAUAGCUCACCCACGCUAAGUGGACUGUCGGGUAAGGGUAAAUCCUCGUCAUCGUCUUCCAAUUGAGACUUGGAUUUAAUCUUGCUCUUCUUUUU
..(((((((((((....)))))..)).))))....((((.....))))......(((((((..(((((((..(((.(((.........))))))..)))))))..)))))))........ ( -37.50)
>DroVir_CAF1 5410 114 - 1
GCGCGCCCUUUGCUUGGGUGAUUUGUAUAGAGCGCCCACACUCAGUGGACUAUCUGGCAGUGGAACAUCUUCAUCAUCAUCUGGCAG------CUUUCGUUUUCGCUUGUUCUUCUUGUG
((((((((.......)))))........((((((.((((.....)))).....(((.(((..((............))..))).)))------....))))))))).............. ( -24.90)
>DroSim_CAF1 1764 120 - 1
UCUCUGACGUUGCUUGGGCGACUUGUAUAGCUCACCCACGCUAAGUGGACUGUCGGGCAAGGGUAAAUCCUCGUCGUCGUCUUCCAGUUGAGACUUGGAUUUAAUCUUGCUCUUCUUUUU
.....((((((((....))))).............((((.....))))...)))(((((((..(((((((..(((.(((.(.....).))))))..)))))))..)))))))........ ( -39.80)
>DroYak_CAF1 2730 120 - 1
UCGCUGACGCUGUUUGGGUGACUUGUAUAGGUCACCCACGCUAAGUGGACUAUCGGGCAAGGGUAAAUCUUCGUCGUCGUCUUCCAAUUGUGACUUGGGUUUAAUCUUGCUCUUCUUUCU
(((((......((.(((((((((......))))))))).))..)))))......(((((((..(((((((..((((..((......))..))))..)))))))..)))))))........ ( -41.80)
>consensus
UCGCUGACGUUGCUUGGGCGACUUGUAUAGCUCACCCACGCUAAGUGGACUAUCGGGCAAGGGUAAAUCCUCGUCAUCGUCUUCCAAUUGAGACUUGGAUUUAAUCUUGCUCUUCUUUUU
.((((......((.(((((((((......))))))))).))..)))).......(((((((..(((((((..(((................)))..)))))))..)))))))........ (-24.11 = -26.49 +   2.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:23 2006