| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,707,894 – 20,708,011 |
| Length | 117 |
| Max. P | 0.835352 |
| Location | 20,707,894 – 20,708,011 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.79 |
| Mean single sequence MFE | -36.93 |
| Consensus MFE | -23.14 |
| Energy contribution | -25.57 |
| Covariance contribution | 2.43 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.835352 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20707894 117 - 23771897 UUAAAUGCUGGUGAUGAUGAUAAUGGUGGGCAGCAUAGCU---GGGCGCCGGCGGUAGAGGCUGUUGCUGCUGUUGAGGCGGCUGAGGGUAAUGGUAGGCAUGGCCCAGGUGGUGUUUCG ....((((((.(.((.((....)).)).).))))))..((---(((((((.((.((....(((.((((((((.....)))))).)).))).)).)).)))...))))))........... ( -42.30) >DroVir_CAF1 4460 102 - 1 UUAGUUGCUGAUGAUGGUGGUGAUGAUG---AACAUAACUCUGUGGCGGCGGCGGUAAUGGCAGCUGUUGC---------------GGGUAAUGAUAGGCAUGGCUUAAAUGAUGCUUGG ...((..((.........))..))....---..(((.((.(((..(((((.((.......)).)))))..)---------------)))).))).(((((((.(......).))))))). ( -28.50) >DroSim_CAF1 844 117 - 1 UUAAAUGCUGGUGAUGAUGAUAAUGGUGGGCAGCAUAGCU---GGGCGCCGGCGGUAGAGGCUGUUGCUGCUGUUGAGGCGGCUGAGGGUAAUGGUAGGCAUGGCCUAGGUGGUGUUUCG ....((((((.(.((.((....)).)).).))))))..((---(((((((.((.((....(((.((((((((.....)))))).)).))).)).)).)))...))))))........... ( -40.00) >consensus UUAAAUGCUGGUGAUGAUGAUAAUGGUGGGCAGCAUAGCU___GGGCGCCGGCGGUAGAGGCUGUUGCUGCUGUUGAGGCGGCUGAGGGUAAUGGUAGGCAUGGCCUAGGUGGUGUUUCG ....((((((.(.((.((....)).)).).))))))........((((((((((((....))))))((((((.....))))))...((((.(((.....))).))))....))))))... (-23.14 = -25.57 + 2.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:21 2006