Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,707,232 – 20,707,352 |
Length | 120 |
Max. P | 0.973442 |
Location | 20,707,232 – 20,707,352 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.50 |
Mean single sequence MFE | -36.43 |
Consensus MFE | -33.41 |
Energy contribution | -33.20 |
Covariance contribution | -0.21 |
Combinations/Pair | 1.14 |
Mean z-score | -2.86 |
Structure conservation index | 0.92 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973442 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20707232 120 - 23771897 UCAUUAGUGAUUUAUUUGAGGCAAUCGACUCGGUGUUGCUCAGAUAAUUGGCGUUUUUGUUCCAUAUUUGAGCAGCAACGGGUGAAAUUUGGUGGGUCGAUUUGAGGGCAAGUAAACAAG .......((.((((((((...((((((((((..(((((((((((((...((((....))))...)))))))))))))((.((......)).))))))))).)))....)))))))))).. ( -37.50) >DroSim_CAF1 183 119 - 1 UCAUUAGUGAUUUAUUUGAGGCAAUCGAAUCGGUGUUGCUCAGAUAAUUGGCGAUUUUGUUCCAUAUUUGAGCAGCAACGGGUGAAAUUUGGUGGGUCGAU-UGAGGGCAAGUAAACAAG .......((.((((((((...(((((((..(..(((((((((((((..(((.(((...)))))))))))))))))))((.((......)).)))..)))))-))....)))))))))).. ( -34.90) >DroYak_CAF1 1165 119 - 1 UCAUAAGUGAUUUAUUCGAGGCAAUCGUUUCAGUGUUGCUCAAAUAAUUGGCGUUUUUGUUCCAUAUUUGAGCAGCAACGAGUGA-AUUUGGUGAGUCGAUUUGAGGGCAAAUAAACAUG ((((....((((((((((((((....)))))..(((((((((((((...((((....))))...)))))))))))))..))))))-)))..))))((..(((((....)))))..))... ( -36.90) >consensus UCAUUAGUGAUUUAUUUGAGGCAAUCGAAUCGGUGUUGCUCAGAUAAUUGGCGUUUUUGUUCCAUAUUUGAGCAGCAACGGGUGAAAUUUGGUGGGUCGAUUUGAGGGCAAGUAAACAAG .......((.((((((((...(((((((((((.(((((((((((((...((((....))))...))))))))))))).(((((...))))).))))))))).))....)))))))))).. (-33.41 = -33.20 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:20 2006