Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,706,400 – 20,706,504 |
Length | 104 |
Max. P | 0.829153 |
Location | 20,706,400 – 20,706,504 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 91.48 |
Mean single sequence MFE | -25.38 |
Consensus MFE | -22.62 |
Energy contribution | -22.78 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.38 |
Structure conservation index | 0.89 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829153 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20706400 104 + 23771897 --------UUUAUUGAAUCGUUUAAUUGACUUGAAUUUUUUCGUUGCAAAUAGGCCAAAAAGUGUGUACUUGUCCCAAGACCGAGGCGCGCGAUGGCCAACAACAA-ACCUAA --------...........((((..(((...((((....))))...)))...(((((....((((((.((((((....)).))))))))))..)))))......))-)).... ( -24.30) >DroPse_CAF1 6735 113 + 1 UCCUUAUAUUUGUUGUACCAUUUAAUUGACUUGACUUUUUUCAUUGCAAAUAGGCCAAAAAGUGUGUACUUGUCCCAAGACCGAGGCGCGCGAUGGCCAUCAACAAUACCUAA .........((((((..........(((...(((......)))...)))...(((((....((((((.((((((....)).))))))))))..)))))..))))))....... ( -27.00) >DroSec_CAF1 3110 104 + 1 --------UUUAUUGAACCGUUUAAUUGACUUGAAUUUUUUCGUUGCAAAUAGGCCAAAAAGUGUGUACUUGUCCCAAGACCGAGGCGCGCGAUGGCCAACAACAA-ACCUAA --------...........((((..(((...((((....))))...)))...(((((....((((((.((((((....)).))))))))))..)))))......))-)).... ( -24.30) >DroSim_CAF1 3093 104 + 1 --------UUUAUUGAACCGUUUAAUUGACUUGAAUUUUUUCGUUGCAAAUAGGCCAAAAAGUGUGUACUUGUCCCAAGACCGAGGCGCGCGAUGGCCAACAACAA-ACCUAA --------...........((((..(((...((((....))))...)))...(((((....((((((.((((((....)).))))))))))..)))))......))-)).... ( -24.30) >DroPer_CAF1 6723 113 + 1 UCCUUAUAUUUGUUGUACCAUUUAAUUGACUUGACUUUUUUCAUUGCAAAUAGGCCAAAAAGUGUGUACUUGUCCCAAGACCGAGGCGCGCGAUGGCCAUCAACAAUACCUAA .........((((((..........(((...(((......)))...)))...(((((....((((((.((((((....)).))))))))))..)))))..))))))....... ( -27.00) >consensus ________UUUAUUGAACCGUUUAAUUGACUUGAAUUUUUUCGUUGCAAAUAGGCCAAAAAGUGUGUACUUGUCCCAAGACCGAGGCGCGCGAUGGCCAACAACAA_ACCUAA .........................(((...((((....))))...)))...(((((....((((((.((((((....)).))))))))))..)))))............... (-22.62 = -22.78 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:19 2006