Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,329,513 – 2,329,603 |
Length | 90 |
Max. P | 0.999008 |
Location | 2,329,513 – 2,329,603 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 82.87 |
Mean single sequence MFE | -17.82 |
Consensus MFE | -12.76 |
Energy contribution | -13.83 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.06 |
Mean z-score | -1.92 |
Structure conservation index | 0.72 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.828902 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2329513 90 + 23771897 AGAAAUAUUUACUCGUCGGAGGAAAGGGAAUCCAAAACAAUAAGCAUGAGAAAUGGGCCACAAAACUUUAUGGCCAA-AACGAGCUGGGAA .......(((((((((.(((..........)))...........(((.....)))(((((.((....)).)))))..-.))))).)))).. ( -15.50) >DroSec_CAF1 78717 90 + 1 AGAAAUGUUUACUCGUAGAAGGAAAGGGAAUCCAAAACAAUAAGCAUGAGAAAUGGGCCAAAAAACUUUAUGGCCCA-AACGAGCUGGGAA ...........(((((....(((.......)))....................(((((((.((....)).)))))))-.)))))....... ( -19.90) >DroSim_CAF1 78950 90 + 1 AGAAAUGUUUACUCGUAGGAGGA-AGGGAAUCCAAAACAAUAAGCAUGAGAAAUGGGCCACAAAACUUUAUGGCCCAAAACGAGCUGGGAA ...........(((((....(((-......)))....................(((((((.((....)).)))))))..)))))....... ( -20.40) >DroAna_CAF1 76330 75 + 1 -----------CGAGUUG-AGGAAA--AAAGCUAAAACAAUAAGCAUGAGAAAUGGGCCACAAAAGUUUAUGGCCCA-UA-GAGCGGAGAA -----------...(((.-......--...(((.........))).......((((((((.((....)).)))))))-).-.)))...... ( -15.50) >consensus AGAAAUGUUUACUCGUAGGAGGAAAGGGAAUCCAAAACAAUAAGCAUGAGAAAUGGGCCACAAAACUUUAUGGCCCA_AACGAGCUGGGAA ...........(((((....(((.......)))....................(((((((.((....)).)))))))..)))))....... (-12.76 = -13.83 + 1.06)
Location | 2,329,513 – 2,329,603 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 82.87 |
Mean single sequence MFE | -21.73 |
Consensus MFE | -16.71 |
Energy contribution | -18.27 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.05 |
Mean z-score | -3.94 |
Structure conservation index | 0.77 |
SVM decision value | 3.32 |
SVM RNA-class probability | 0.999008 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2329513 90 - 23771897 UUCCCAGCUCGUU-UUGGCCAUAAAGUUUUGUGGCCCAUUUCUCAUGCUUAUUGUUUUGGAUUCCCUUUCCUCCGACGAGUAAAUAUUUCU ......(((((((-..((((((((....))))))))......................(((.......)))...))))))).......... ( -21.70) >DroSec_CAF1 78717 90 - 1 UUCCCAGCUCGUU-UGGGCCAUAAAGUUUUUUGGCCCAUUUCUCAUGCUUAUUGUUUUGGAUUCCCUUUCCUUCUACGAGUAAACAUUUCU ......((((((.-(((((((..........)))))))....................(((.......)))....)))))).......... ( -21.80) >DroSim_CAF1 78950 90 - 1 UUCCCAGCUCGUUUUGGGCCAUAAAGUUUUGUGGCCCAUUUCUCAUGCUUAUUGUUUUGGAUUCCCU-UCCUCCUACGAGUAAACAUUUCU ......((((((..((((((((((....))))))))))....................(((......-)))....)))))).......... ( -25.70) >DroAna_CAF1 76330 75 - 1 UUCUCCGCUC-UA-UGGGCCAUAAACUUUUGUGGCCCAUUUCUCAUGCUUAUUGUUUUAGCUUU--UUUCCU-CAACUCG----------- ......((..-.(-((((((((((....))))))))))).......))................--......-.......----------- ( -17.70) >consensus UUCCCAGCUCGUU_UGGGCCAUAAAGUUUUGUGGCCCAUUUCUCAUGCUUAUUGUUUUGGAUUCCCUUUCCUCCUACGAGUAAACAUUUCU ......((((((..((((((((((....))))))))))..(((...((.....))...)))..............)))))).......... (-16.71 = -18.27 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:55 2006