Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,703,856 – 20,703,962 |
Length | 106 |
Max. P | 0.719996 |
Location | 20,703,856 – 20,703,962 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.90 |
Mean single sequence MFE | -15.30 |
Consensus MFE | -11.25 |
Energy contribution | -11.37 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -1.40 |
Structure conservation index | 0.74 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.719996 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20703856 106 + 23771897 UCUUCCUAUUUAAUUAUUUUGUGUAUAUAAAUUAGCUAUACAUCAGGCACCAAAGCUUGCACAAGCAUGCAUUAGACCUCCUUGUUGUCUAAAAGGCUCCAUCAAA-------------- ....................(((((((.........)))))))..((..((...((.(((....))).)).((((((.........))))))..))..))......-------------- ( -17.40) >DroSec_CAF1 599 112 + 1 UCUUCCUUUUUAAUACUUUUGUGUAUAUAAAUUACCUAUACAUCAGGCACCAAUGCUUUCAU--------AUUAGACCUCCUUGUUGUCUAAAAGGCUCUAUCAAAUCUUAUAUUUACAA ..................(((((.((((((....(((.......))).......(((((...--------.((((((.........)))))))))))...........)))))).))))) ( -13.30) >DroSim_CAF1 600 95 + 1 UCUUUCUAUUUAAUACUUUUGUGUAUAUAAAUUACCUAUACAUCAGGCACCAAAGCUUGCACAAGC----AUUAGACCUCUUUGCUGUCUAAAAGGCUC--------------------- ...............((((((((((((.........))))))).(((((.((((((((((....))----)..))....))))).))))))))))....--------------------- ( -15.20) >consensus UCUUCCUAUUUAAUACUUUUGUGUAUAUAAAUUACCUAUACAUCAGGCACCAAAGCUUGCACAAGC____AUUAGACCUCCUUGUUGUCUAAAAGGCUC_AUCAAA______________ ....(((.............(((((((.........)))))))(((((......)))))............((((((.........)))))).)))........................ (-11.25 = -11.37 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:15 2006