Locus 7758

Sequence ID 3L_DroMel_CAF1
Location 20,700,090 – 20,700,195
Length 105
Max. P 0.690643
window12635

overview

Window 5

Location 20,700,090 – 20,700,195
Length 105
Sequences 3
Columns 111
Reading direction reverse
Mean pairwise identity 82.87
Mean single sequence MFE -25.30
Consensus MFE -16.69
Energy contribution -16.47
Covariance contribution -0.22
Combinations/Pair 1.14
Mean z-score -2.06
Structure conservation index 0.66
SVM decision value 0.33
SVM RNA-class probability 0.690643
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20700090 105 - 23771897
CUGAUUCUGCCUUUCUUGGCGAUGCUGCG-UCAUAUACAUAUAAUGCAUUUUAUUUUAC-----GUGUGUUCCUGCCACAUGAACACACGACCAAUGUGGCAUUUCAUACG
.(((....(((......)))(((((..((-(.........((((......))))....(-----((((((((.((...)).)))))))))....)))..)))))))).... ( -27.90)
>DroEre_CAF1 22075 105 - 1
CUGAUACUGCCUUUCUUGCUGAUGCUGCC-UCAUACACACAUAAUGCAUUUUAUUUUAU-----GUGUGUUCUUCCGCCAUAUACACACGAGUACUGUGGCAUUUCAUAAG
.(((..(.((...((.....)).)).)..-))).((((((((((...........))))-----))))))......(((((((((......))).)))))).......... ( -22.80)
>DroYak_CAF1 2944 111 - 1
CUGAUACUGCCUUUCUUGCUGAUGCUGUCGUCAUACACACAUAAUGCAUUUUAUUUUAUGUUUUGUGUGUUCUUCGAGCAUGUACACACGAGUCCUGUGGCAUUUUAUAAG
.......((((...((((.((.((((((((....(((((((....((((........))))..)))))))....))).)).)))..))))))......))))......... ( -25.20)
>consensus
CUGAUACUGCCUUUCUUGCUGAUGCUGCC_UCAUACACACAUAAUGCAUUUUAUUUUAU_____GUGUGUUCUUCCAACAUGUACACACGAGUACUGUGGCAUUUCAUAAG
.(((...((((.....(((((((((....................)))))..............((((((.............)))))).))))....))))..))).... (-16.69 = -16.47 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:14 2006