Locus 7757

Sequence ID 3L_DroMel_CAF1
Location 20,698,666 – 20,698,773
Length 107
Max. P 0.732280
window12634

overview

Window 4

Location 20,698,666 – 20,698,773
Length 107
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 69.63
Mean single sequence MFE -23.97
Consensus MFE -0.97
Energy contribution -4.97
Covariance contribution 4.00
Combinations/Pair 1.00
Mean z-score -2.02
Structure conservation index 0.04
SVM decision value 0.43
SVM RNA-class probability 0.732280
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20698666 107 - 23771897
AAGUCCACCUCAACUUGGA------GGGAAACCACCCAGGAGCCAUCCGAAACCAUCUGAAACCACUAAACCCAGCCAACCACAGGCAGAUGGCUUCAAUUCGGCAGUU-------UGCU
...((((........))))------((....)).....(((((((((.((.....)).................(((.......))).))))))))).....(((....-------.))) ( -27.70)
>DroPse_CAF1 966 105 - 1
AAGUCCACCUCAUCUUCUACCCAAUAAGAAACCACCCACGC--------------ACUCAGUCCCCACAGCCCAC-AGCCCACAGACAGCUGCCUUCAAUUUGGUGCUUCUGUCGGUGCG
..............((((........))))........(((--------------(((...........((....-.))..(((((.(((.(((........))))))))))).)))))) ( -19.60)
>DroEre_CAF1 20563 107 - 1
AAGUCUACCUCAUCUUGGG------GGGAAACCAGCCGAGAACCACCCGAAACCAUCUGAAACCACUAAACCCACCCAACCACAGACAGAUGGCUUCAAUUCGGCAGUU-------UGCU
..(((.......((((((.------((....))..)))))).......(((.(((((((...........................))))))).))).....)))....-------.... ( -27.03)
>DroYak_CAF1 1536 107 - 1
AAGUCUACCUCAUCUUGGA------GGGAAACCACCCAAGAACCACCCGAAACCAUCUGAAACCACUAAACCCACCCAACCACAGACAGAUGGCUUCAAUUCGGCAGUU-------UGCU
..(((.......((((((.------((....))..)))))).......(((.(((((((...........................))))))).))).....)))....-------.... ( -25.93)
>DroPer_CAF1 966 105 - 1
AAGUCCACCUCAUCUUCUACCCAAUAAGAAACCACCCACGC--------------ACUCAGUCCCCACAGCCCAC-AGCCCACAGACAGCUGCCUUCAAUUUGGUGCUUCUGUCGGUGCG
..............((((........))))........(((--------------(((...........((....-.))..(((((.(((.(((........))))))))))).)))))) ( -19.60)
>consensus
AAGUCCACCUCAUCUUGGA______GGGAAACCACCCAAGA_CCA_CCGAAACCAUCUGAAACCACUAAACCCACCCAACCACAGACAGAUGGCUUCAAUUCGGCAGUU_______UGCU
.......((................((....))...............(((.(((((((...........................))))))).))).....))................ ( -0.97 =  -4.97 +   4.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:13 2006