Locus 7754

Sequence ID 3L_DroMel_CAF1
Location 20,672,191 – 20,672,309
Length 118
Max. P 0.678133
window12627

overview

Window 7

Location 20,672,191 – 20,672,309
Length 118
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 72.35
Mean single sequence MFE -27.44
Consensus MFE -16.51
Energy contribution -17.07
Covariance contribution 0.56
Combinations/Pair 1.08
Mean z-score -1.50
Structure conservation index 0.60
SVM decision value 0.30
SVM RNA-class probability 0.678133
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20672191 118 - 23771897
CACAUACUUCAUGAAGUACAGCAAGUUUAUUUUGCGAAAAUAUGGAAGAUCGUUUCCGUUGAACUACUUCGC--CAUCGCCUUUUUGGUGGGGCUCUUCACCAACCUUUUGCUGGUCAUU
....(((((....)))))(((((((........((((....(((((((....))))))).(((....)))..--..))))....((((((((....))))))))...)))))))...... ( -28.50)
>DroSim_CAF1 49938 104 - 1
----------------UACAGCAAGUUUAUUUUGCGAAAAUAUGGAAGAUCGUUUCCGUUGAACUACUUAGCCUCAUCGCCUUUUUGGUGGGUCUCUUCACCAAUCUUUUGCUGGUCAUU
----------------..(((((((........((((......(((((....)))))(((((.....)))))....))))....((((((((....))))))))...)))))))...... ( -26.30)
>DroAna_CAF1 46930 118 - 1
CACGUAUUUCAUGAGAAACAGCAAGUUCAUACUGCGAAAGUAUGGAAAGCCAUUUCCAUUCAACUACUACGG--CAUAUGCUUCCAGAUAGGACUCUUCAGCAACCUCCUGCUGGUGAUC
(((.........(((....((((..((((((((.....))))))))..(((...................))--)...))))(((.....))))))..(((((......))))))))... ( -27.51)
>consensus
CAC_UA_UUCAUGA__UACAGCAAGUUUAUUUUGCGAAAAUAUGGAAGAUCGUUUCCGUUGAACUACUUCGC__CAUCGCCUUUUUGGUGGGACUCUUCACCAACCUUUUGCUGGUCAUU
..................(((((((((((............(((((((....))))))))))))).....................((((((....)))))).......)))))...... (-16.51 = -17.07 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:07 2006