| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,671,707 – 20,671,798 |
| Length | 91 |
| Max. P | 0.901522 |
| Location | 20,671,707 – 20,671,798 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 90.34 |
| Mean single sequence MFE | -22.27 |
| Consensus MFE | -17.30 |
| Energy contribution | -17.30 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.39 |
| Structure conservation index | 0.78 |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.901522 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20671707 91 - 23771897 UACUCAUUCAAGUUUAUGAAUACAAUAAGCUGGAUUUCUAUAAUUUUUUCACCACUCAUUGUCGGUGGAAAAGUAGAAAUUAUA-GCU------UAUC .....(((((......)))))...(((((((((((((((((...(((((((((((.....)).)))))))))))))))))).))-)))------))). ( -27.60) >DroSec_CAF1 43256 91 - 1 UACUCAUUCAAGUUUAUGAAUAUAAUAAGCUGGAUUUCUAUAAUUUUUUCACCACUCAUUGUCAGUGGAAAAGUAGAAAUUAUAUGCUAAU------- .....(((((......)))))......(((..(((((((((...((((((((.((.....))..)))))))))))))))))....)))...------- ( -18.60) >DroSim_CAF1 49450 97 - 1 UACUCAUUCAAGUUUAUGAAUAUAAGAAGCUGGAUUUCUAUAAUUUUUUCACCACUCAUUGUCAGUGGAAAAGUAGAAAUUAUA-GCUAAUUUUUAUC .....(((((......)))))((((((((((((((((((((...((((((((.((.....))..))))))))))))))))).))-)))...)))))). ( -20.60) >consensus UACUCAUUCAAGUUUAUGAAUAUAAUAAGCUGGAUUUCUAUAAUUUUUUCACCACUCAUUGUCAGUGGAAAAGUAGAAAUUAUA_GCUAAU___UAUC .....(((((......)))))......(((..(((((((((...((((((((.((.....))..)))))))))))))))))....))).......... (-17.30 = -17.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:04 2006