| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,667,756 – 20,667,846 |
| Length | 90 |
| Max. P | 0.993100 |
| Location | 20,667,756 – 20,667,846 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 72.67 |
| Mean single sequence MFE | -35.85 |
| Consensus MFE | -16.67 |
| Energy contribution | -20.30 |
| Covariance contribution | 3.63 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.93 |
| Structure conservation index | 0.47 |
| SVM decision value | 2.37 |
| SVM RNA-class probability | 0.993100 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20667756 90 + 23771897 AAGAGGUGAGAAGAGGAGCUUUAUGGCAG------UAGCGGUGGCUAUGGCAACCGAAAGAGCCA-----AACUGC-CGCAC-UGAGGUUCGCUCUCAGCGCU ....((((...((((((((((((((((((------((((....))).((((...(....).))))-----.)))))-))...-)))))))).))))...)))) ( -35.20) >DroSec_CAF1 39808 97 + 1 AAGAGGUGAGAAGAGGAGCUUUAUGGCAGUAGCAGUAGCGGUGGCUAUGGCAACAGAAAGAGCCA-----AACUGCCCGCACAUGAGGUUCGCUCUUAGCCC- ....(((...(((((((((((((((((....(((((.....(((((.((....)).....)))))-----.)))))..)).)))))))))).))))).))).- ( -40.10) >DroSim_CAF1 45580 97 + 1 AAGAGGUGAGAAGAGGAGCUUUAUGGCAGUAGCAGUAGCGGUGGCUAUGGCAACAGAAAGAGCCA-----AACUGCCCGCACAUGAGGUUCGCUCUUAGCCC- ....(((...(((((((((((((((((....(((((.....(((((.((....)).....)))))-----.)))))..)).)))))))))).))))).))).- ( -40.10) >DroAna_CAF1 42063 91 + 1 AAAAGACGG-----CAGGCUUCAUGG-----GCAGCUGC-UUGGCUUUGGCAACAGAAAGAGAAAGAGGAGACUUACCCCACA-GUCUGCCCCACUCGGCGCU .......((-----(..(((....((-----(((((((.-.(((.((((....))))........(((....)))...)))))-).)))))).....)))))) ( -28.00) >consensus AAGAGGUGAGAAGAGGAGCUUUAUGGCAG__GCAGUAGCGGUGGCUAUGGCAACAGAAAGAGCCA_____AACUGCCCGCACAUGAGGUUCGCUCUCAGCCC_ ....(.(((((....((((((((((((....(((((.....(((((.((....)).....)))))......)))))..)).))))))))))..))))).)... (-16.67 = -20.30 + 3.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:59 2006