Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,319,873 – 2,319,966 |
Length | 93 |
Max. P | 0.869826 |
Location | 2,319,873 – 2,319,966 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 77.36 |
Mean single sequence MFE | -24.32 |
Consensus MFE | -13.92 |
Energy contribution | -14.72 |
Covariance contribution | 0.79 |
Combinations/Pair | 1.16 |
Mean z-score | -1.96 |
Structure conservation index | 0.57 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.869826 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2319873 93 + 23771897 AUGCUGGCUUGA---AUCAAAAAU--------------AAGAUUUCCCC--GCAGCUUGAAUUUCAUUUCGCUGCGGUUGUUGGCCAUUUUUCCGGCUCCCCUGCCACCUUU ..((..((..((---(((......--------------..)))))..((--(((((..(((......))))))))))..))..)).........(((......)))...... ( -27.30) >DroSec_CAF1 69002 92 + 1 AUGUUGGCUUGA---AUCAAAAAU--------------AAGAUUUCCCC--GCAGCUUGAAUUUCAUUUCGCUGCGAUUGUUGGCCAUUUU-UCGGCUCCCCUGCCACCUAA ....(((((.((---(((......--------------..)))))...(--(((((..(((......)))))))))......)))))....-..(((......)))...... ( -24.10) >DroSim_CAF1 69268 92 + 1 AUGUUGGCUUGA---AUCAAAAAU--------------AAGAUUUCCCC--GCAGCUUGAAUUUCAUUUCGCUGCGAUUGUUGGCCAUUUU-CCGGCUCCCCUGCCACCUAA ....(((((.((---(((......--------------..)))))...(--(((((..(((......)))))))))......)))))....-..(((......)))...... ( -24.10) >DroEre_CAF1 72393 92 + 1 AUGCUGGCUUCA---AUCAGAAAU--------------AAGAUUUCCCC--GCAGCUUGAAUUUCAUUUCGCUGCGAAUGUUGGCCAUUUU-CCGGCAUCCCUGCCAGCUGC ..((((((....---.........--------------..........(--(((((..(((......))))))))).(((((((.......-)))))))....))))))... ( -28.50) >DroYak_CAF1 71904 95 + 1 AUGCUGGCUUGAAUAAUCAAGAAU--------------AAGAUUUCCCC--GCAGCUUGAAUUUCAUUUCGCUACGAUUGUUGGCCACUUU-CCGGCUCCCCUGCCACCUUC ....(((((..(((((((..(((.--------------.....)))...--(.(((..(((......)))))).)))))))))))))....-..(((......)))...... ( -20.20) >DroAna_CAF1 65841 98 + 1 GAACUGGCUUAA---AUCAGAGAUGCGGCAUCUUAAAGAACGCUCCCCCGAGCAGCAUGAAUUUCAUUUGGC-GCAAUCGCUGGCUAUUUU-CCGC---------AGCACAA ....(((((...---..(((.((((((.((...........((((....))))...(((.....))).)).)-)).))).)))((......-..))---------))).)). ( -21.70) >consensus AUGCUGGCUUGA___AUCAAAAAU______________AAGAUUUCCCC__GCAGCUUGAAUUUCAUUUCGCUGCGAUUGUUGGCCAUUUU_CCGGCUCCCCUGCCACCUAA ..((..((((((....))))...............................(((((..(((......))))))))....))..)).........(((......)))...... (-13.92 = -14.72 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:53 2006