Locus 7749

Sequence ID 3L_DroMel_CAF1
Location 20,667,576 – 20,667,678
Length 102
Max. P 0.557279
window12618

overview

Window 8

Location 20,667,576 – 20,667,678
Length 102
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 82.78
Mean single sequence MFE -20.40
Consensus MFE -12.33
Energy contribution -12.33
Covariance contribution 0.01
Combinations/Pair 1.19
Mean z-score -2.18
Structure conservation index 0.60
SVM decision value 0.05
SVM RNA-class probability 0.557279
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20667576 102 - 23771897
CAGACCUAUUUAUCUAUAUCUUAUCUCGUAGAUAAAAAUUGAAAGCAUUUUACAGCGAAAAAGUGCCAACAUAUUAAUCAGUUCAGGCUUCAAAGCCUGAAA
........(((((((((..........)))))))))........(((((((........)))))))...............((((((((....)))))))). ( -22.50)
>DroSec_CAF1 39635 97 - 1
CAGACCAAUUUGUCUACCUCUUAUCUGGUAGAUAAGAAUUGAUAGCAUUCCACGGCGAAAAUGUGCCGGCAUACUC-CCAUUUCAGGCUUCCACCCCC----
.((.((...(((((((((........)))))))))(((.((..((.((....(((((......)))))..)).)).-.)).))).)))).........---- ( -23.20)
>DroSim_CAF1 45406 98 - 1
CAGACCAAUUUAUCUAUAUCUUAUCUCGUAGAUAAAAAUUGAUAGCAUUUCACGGCGAAAAAGUGCCAACAUACUAACCAUUUCAGGCUUCCAAGCCC----
.....((((((((((((..........)))))))..)))))............((((......))))..................((((....)))).---- ( -15.50)
>consensus
CAGACCAAUUUAUCUAUAUCUUAUCUCGUAGAUAAAAAUUGAUAGCAUUUCACGGCGAAAAAGUGCCAACAUACUAACCAUUUCAGGCUUCCAAGCCC____
........(((((((((..........))))))))).................((((......))))..................(((......)))..... (-12.33 = -12.33 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:56 2006