Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,661,027 – 20,661,119 |
Length | 92 |
Max. P | 0.974925 |
Location | 20,661,027 – 20,661,119 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 91.91 |
Mean single sequence MFE | -26.87 |
Consensus MFE | -26.13 |
Energy contribution | -26.47 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.31 |
Structure conservation index | 0.97 |
SVM decision value | 1.74 |
SVM RNA-class probability | 0.974925 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20661027 92 + 23771897 UAAAACAUCCUCCU-UAGGAUCCCAAAAUAAUAAGUUUUUUGGGCUGGGAAAGGCCAAGUCAAUGUCAAUGGGGUUGGAUUGUAGGGGAUGCA .....(((((((((-(((...(((((((.........)))))))))))).....((((.((.((....)).)).))))......))))))).. ( -25.10) >DroSec_CAF1 33089 86 + 1 UA-AACAUCCUCCUGUAGGAUCCCAAAAUGAUAACUUUUUUGGGCUGGGAAAGGCCAAGUC------AAUGGGGUUGGAUUGUAGGGGAUGCA ..-..(((((.((((((((((((((...((((.......((((.((.....)).)))))))------).)))))))...)))))))))))).. ( -27.21) >DroSim_CAF1 37929 86 + 1 UA-AACAUCCUCCUGUAGGAUCCCAGAAUGAUAACUUUUUUGGGCUGGGAAAGGCCAAGUC------AAUGGGGUUGGAUUGUAGGGGAUGCA ..-..(((((.((((((((((((((...((((.......((((.((.....)).)))))))------).)))))))...)))))))))))).. ( -28.31) >consensus UA_AACAUCCUCCUGUAGGAUCCCAAAAUGAUAACUUUUUUGGGCUGGGAAAGGCCAAGUC______AAUGGGGUUGGAUUGUAGGGGAUGCA .....(((((.((((((((((((((.............(((((.((.....)).)))))..........)))))))...)))))))))))).. (-26.13 = -26.47 + 0.33)
Location | 20,661,027 – 20,661,119 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 91.91 |
Mean single sequence MFE | -20.93 |
Consensus MFE | -18.97 |
Energy contribution | -19.30 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.70 |
Structure conservation index | 0.91 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958675 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20661027 92 - 23771897 UGCAUCCCCUACAAUCCAACCCCAUUGACAUUGACUUGGCCUUUCCCAGCCCAAAAAACUUAUUAUUUUGGGAUCCUA-AGGAGGAUGUUUUA .(((((((((.........................((((......))))(((((((.........)))))))......-))).)))))).... ( -20.00) >DroSec_CAF1 33089 86 - 1 UGCAUCCCCUACAAUCCAACCCCAUU------GACUUGGCCUUUCCCAGCCCAAAAAAGUUAUCAUUUUGGGAUCCUACAGGAGGAUGUU-UA .(((((((((...((((........(------((((((((........))).....))))))........)))).....))).)))))).-.. ( -21.39) >DroSim_CAF1 37929 86 - 1 UGCAUCCCCUACAAUCCAACCCCAUU------GACUUGGCCUUUCCCAGCCCAAAAAAGUUAUCAUUCUGGGAUCCUACAGGAGGAUGUU-UA .(((((((((...((((........(------((((((((........))).....))))))........)))).....))).)))))).-.. ( -21.39) >consensus UGCAUCCCCUACAAUCCAACCCCAUU______GACUUGGCCUUUCCCAGCCCAAAAAAGUUAUCAUUUUGGGAUCCUACAGGAGGAUGUU_UA .(((((((((.........................((((......))))(((((((.........))))))).......))).)))))).... (-18.97 = -19.30 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:53 2006