| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,660,462 – 20,660,674 |
| Length | 212 |
| Max. P | 0.995286 |
| Location | 20,660,462 – 20,660,565 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 90.54 |
| Mean single sequence MFE | -18.91 |
| Consensus MFE | -18.65 |
| Energy contribution | -18.11 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.88 |
| Structure conservation index | 0.99 |
| SVM decision value | 2.56 |
| SVM RNA-class probability | 0.995286 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20660462 103 - 23771897 AGGAAAAUUGUUAAUGUAAAAAAACGGUUAAAGGACGAAAAAGUUCAGUCAAGAAAAAG-GAACGAAGUUCUUUAAUUUAGAAUUCGCACAAUUUUUAAA--AAAG ..(((((((((....(..((.....(((((((((((......((((.............-))))...))))))))))).....))..))))))))))...--.... ( -16.72) >DroSec_CAF1 32543 106 - 1 AGGGGAAUUGUUAAUGUGAAAAAACGGUUAAAGGACGAAAAAGUUCAGUCAAGAAAAAAGGAACAAAGUUCUUUAAUUUGGGAUUCACACAAUUUUGAAAUAAAAG ...((((((((....(((((.....(((((((((((......((((..(........)..))))...))))))))))).....))))))))))))).......... ( -19.70) >DroSim_CAF1 37384 105 - 1 AGGGGAAUUGUUAAUGUGAAAAAACGGUUAAAGGACGAAAAAGUUCAGACAAGAAAAAA-GAGCGAAGUUCUUUAAUUAAGGAUUCGCACAAUUUUGAAAUAAAAG ...((((((((....(((((.....(((((((((((......((((.............-))))...))))))))))).....))))))))))))).......... ( -20.32) >consensus AGGGGAAUUGUUAAUGUGAAAAAACGGUUAAAGGACGAAAAAGUUCAGUCAAGAAAAAA_GAACGAAGUUCUUUAAUUUAGGAUUCGCACAAUUUUGAAAUAAAAG ...((((((((....(((((.....(((((((((((......((((..............))))...))))))))))).....))))))))))))).......... (-18.65 = -18.11 + -0.55)
| Location | 20,660,565 – 20,660,674 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 93.17 |
| Mean single sequence MFE | -23.47 |
| Consensus MFE | -21.37 |
| Energy contribution | -20.93 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.676423 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20660565 109 - 23771897 GAAAGGAACUUUACUUGAGUGAGUUAUAAAGCCAAAAGGGGAAAGUUGAACGAAACGCUUUGCGGGGUGAAGCGCCUAAAAAGGUUAAAAACCCAAAGAAAGAUGGGAA ...(((((((((.(((...((.(((....)))))...))).))))))........(((((..(...)..))))))))..............((((........)))).. ( -23.00) >DroSec_CAF1 32649 104 - 1 -----GAACCUUACUUGAGUGAGUUAUAAAGUCAAAAGGGGAAAGUUGAACGAAACGCUUUGCGGGGUGAAGCGCCUAAAAAGGUUAAAAACCCAACGCAAAAUGGGAA -----.((((((.(((...(((.(.....).))).)))(((...(((......)))((((..(...)..)))).)))...)))))).....((((........)))).. ( -23.70) >DroSim_CAF1 37489 104 - 1 -----GAACCUUACUUGAGUGAGUUAUAAAGCCAAAAGGGGAAAGUUGAACGAAACGCUUUGCGGGGUGAAGCGCCUAAAAAGGUUAAAAACCCAACGCGAAAUGGGAA -----.((((((.(((...((.(((....))))).)))(((...(((......)))((((..(...)..)))).)))...)))))).....((((........)))).. ( -23.70) >consensus _____GAACCUUACUUGAGUGAGUUAUAAAGCCAAAAGGGGAAAGUUGAACGAAACGCUUUGCGGGGUGAAGCGCCUAAAAAGGUUAAAAACCCAACGCAAAAUGGGAA ......((((((.(((...((.(((....))))).)))(((...(((......)))((((..(...)..)))).)))...)))))).....((((........)))).. (-21.37 = -20.93 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:51 2006