Locus 7744

Sequence ID 3L_DroMel_CAF1
Location 20,653,828 – 20,653,939
Length 111
Max. P 0.783540
window12610

overview

Window 0

Location 20,653,828 – 20,653,939
Length 111
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 90.88
Mean single sequence MFE -27.46
Consensus MFE -21.49
Energy contribution -21.66
Covariance contribution 0.17
Combinations/Pair 1.12
Mean z-score -1.74
Structure conservation index 0.78
SVM decision value 0.56
SVM RNA-class probability 0.783540
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20653828 111 - 23771897
CAAAUUGCUUAGAGCGAUGCUUAUUAGCAGCUGACACGGCUGCGGCUGUCUCAUCAUCAAAGUUGCGGCCUAAACUGC--GAGCAGCUUCA---AAAAUACGUAUACAAAAUAAUC
...(((((.....)))))((.((((.(((((((...)))))))(((((.(((..(......)..((((......))))--))))))))...---..)))).))............. ( -27.70)
>DroSec_CAF1 26423 111 - 1
CAAAUUGCUUAGAGCGAUGCUUAUUAGCAGCUGACACGGCUACGGCUGUCUCAUCAUCAAAGUUGCGGCCUAAACUGC--GAGCAGCUUAA---AAAAUACGUAUACAAAAUAAUC
...(((((.....)))))(((....))).(.(((.(((((....))))).))).)....(((((((.((.......))--..)))))))..---...................... ( -27.20)
>DroSim_CAF1 30277 111 - 1
CAAAUUGCUUAGAGCGAUGCUUAUUAGCAGCUGACACGGCUACGGCUGUCUCAUCAUCAAAGUUGCGGCCUAAACUGC--GAGCAGCUUAA---AAAAUACGUAUACAAAAUAAUC
...(((((.....)))))(((....))).(.(((.(((((....))))).))).)....(((((((.((.......))--..)))))))..---...................... ( -27.20)
>DroYak_CAF1 207016 111 - 1
CAAAUUGCUUAGAGCGAUGCUUAUUAGCAGCUGACACGGCUACGGCUGUCUCAUCAUCAAAGUUGCGGCCUAAACUGC--GAGCAGCUUAA---AAAAUACGUAUACAAAAUAAUC
...(((((.....)))))(((....))).(.(((.(((((....))))).))).)....(((((((.((.......))--..)))))))..---...................... ( -27.20)
>DroAna_CAF1 26281 110 - 1
CAAAUUGCUUAGAGCGAUGCUUAUUAGCAGCUGACACGG------UCGCCUCAUCAUCAAAGUUGUGGCCUAAACUGCUCAAGAAGCUCAAAUAAAAAUACGAGCUUAAAAUAAGC
......((((((((((.((((....))))........((------((((..(.........)..)))))).....)))))...((((((............))))))....))))) ( -28.00)
>consensus
CAAAUUGCUUAGAGCGAUGCUUAUUAGCAGCUGACACGGCUACGGCUGUCUCAUCAUCAAAGUUGCGGCCUAAACUGC__GAGCAGCUUAA___AAAAUACGUAUACAAAAUAAUC
...(((((.....)))))(((....))).(.(((.(((((....))))).))).)....(((((((.((.......))....)))))))........................... (-21.49 = -21.66 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:48 2006