Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,652,691 – 20,652,783 |
Length | 92 |
Max. P | 0.922764 |
Location | 20,652,691 – 20,652,783 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 92.90 |
Mean single sequence MFE | -18.30 |
Consensus MFE | -15.59 |
Energy contribution | -15.65 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.05 |
Mean z-score | -2.18 |
Structure conservation index | 0.85 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922764 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20652691 92 - 23771897 AAAAAAAAACACAACAACAAUUG-AAUGCCAAAUUGAAAGUGGUUGACAGGCAACUGGAAAAACAAC---AGCCAAGGCAAUAGCUUCGAGUGUCC ................(((.(((-((.((...((((....((((((.(((....)))(.....)..)---)))))...)))).))))))).))).. ( -19.80) >DroSec_CAF1 25259 92 - 1 AAA---AAACACAACAACAAUUG-AAUGCCAAAUUGAAAGUGGUUGACAGGCAACUGGAAAAACAACAAGAGCCAAGGCAAUAGCUUCGAGUGUCC ...---..........(((.(((-((.((..........((.(((..(((....)))....))).))....((....))....))))))).))).. ( -17.30) >DroSim_CAF1 28734 93 - 1 AAA---AAACACAACAACAAUUGUAAGGCCAAAUUGAAAGUGGUUGACAGGCAACUGGAAAAACAACAAGAGCCAAGGCAAUAGCUUCGAGUGUCC ...---..((((..............(((....(((...((..((..(((....)))..)).))..)))..))).((((....))))...)))).. ( -17.90) >DroYak_CAF1 205872 90 - 1 AAAA--AAACACAACAACAAUUG-AAUGCCAAACUGAAAGUGGUUGACAGGCAACUGGAAAAACAAC---GGCCAAGGCAAUAACUUCGAGUGUUC ....--.........((((.(((-((((((..((.....))(((((.(((....)))(.....)..)---))))..)))).....))))).)))). ( -18.20) >consensus AAA___AAACACAACAACAAUUG_AAUGCCAAAUUGAAAGUGGUUGACAGGCAACUGGAAAAACAAC___AGCCAAGGCAAUAGCUUCGAGUGUCC ........((((.....(((((.........)))))...(.(((((.(((....)))..............((....))..))))).)..)))).. (-15.59 = -15.65 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:42 2006