| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,649,477 – 20,649,571 |
| Length | 94 |
| Max. P | 0.587880 |
| Location | 20,649,477 – 20,649,571 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 80.11 |
| Mean single sequence MFE | -21.67 |
| Consensus MFE | -18.58 |
| Energy contribution | -18.30 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.587880 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20649477 94 - 23771897 CAUCUAUUUAUUCUAUAUGUCAUAUACACA----CCUCCA-ACUAUUCGCAGAUGUUGCCGCAUAUGCGCCAAAACUUUGGGCGAAUCCUGCGGCGGUC .............................(----((...(-((...........)))((((((....((((.........)))).....))))))))). ( -19.20) >DroSec_CAF1 22229 94 - 1 CAUCCAUUUAUUCUAUAUGUCAUAUACAUA----CCUCCA-ACUAUUCGCAGAUGUUGCCGCAUAUGCGCCAAAACUUUAGGCGAAUCCUGCGGCGGUC ...((..........(((((.....)))))----......-................((((((....((((.........)))).....)))))))).. ( -20.80) >DroEre_CAF1 11014 89 - 1 CAUCCAUCUACACUAUAUGUCAUAUA--------CCUCC--ACUAUUCGCAGAUGCUGCCGCAUAUGCGCCAAAACCUUGGGCGAAUCCUGCGGCGGUC ..........................--------.....--.............(((((((((....((((.........)))).....))))))))). ( -22.00) >DroYak_CAF1 202348 90 - 1 CAUCCAUUUAUACUAUAUGUCAUAUA--------CCUCCA-ACUAUUCGCAGAUGUUGCCGCAUAUGCGCCAAAACUUUGGGCGAAUCCUGCGGCGGCC ..........................--------......-.............(((((((((....((((.........)))).....))))))))). ( -21.40) >DroAna_CAF1 22202 83 - 1 UAUACAUAUCCG------GUCGUUUU---------GUCCA-ACUAUUCGCAGAUGUUGCCGCAUAUGCGCCAAAACUCUGGGCGAGUCCUGCGGCGGUC ...((((...((------(..(((..---------....)-))...)))...))))(((((((....((((.........)))).....)))))))... ( -21.10) >DroPer_CAF1 30522 98 - 1 CCUA-AUAUGCACUCUAAUUUAUGUAUGUAUAUUCAUCUAUUCCAUUCGCAGAUGUUGUCGCAUCUGCGCCAAGACCUUGGGCGAAUCCUGCGGCGGUC ...(-(((((((..(........)..))))))))........((....((((((((....))))))))(((....(....)(((.....)))))))).. ( -25.50) >consensus CAUCCAUUUACACUAUAUGUCAUAUA________CCUCCA_ACUAUUCGCAGAUGUUGCCGCAUAUGCGCCAAAACUUUGGGCGAAUCCUGCGGCGGUC .......................................................((((((((....((((.........)))).....)))))))).. (-18.58 = -18.30 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:41 2006