| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,647,311 – 20,647,431 |
| Length | 120 |
| Max. P | 0.594477 |
| Location | 20,647,311 – 20,647,431 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.67 |
| Mean single sequence MFE | -29.30 |
| Consensus MFE | -20.42 |
| Energy contribution | -21.23 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.594477 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20647311 120 + 23771897 GUUAGUUAGUUACAUUCGUUUCUUUAAAGAUUUUCGCUUUCUGCGUAGUUUUUUGUAUGUGAAUUUGCUCGGUGAGAUUUUGUAGUCUUCAUCGAAUUCCUGUUCGAGUUUUAUUAGAUU .........((((((.((.......(((((((..(((.....))).))))))))).))))))....(((((((((((((....)))).)))))((((....))))))))........... ( -22.21) >DroPse_CAF1 29116 117 + 1 ---AGUGGCUCACAUGCGUUUCCUCAAGGACUUUCGCUUUCUGCGGAGCUUUUUGUAGGUGAAUUUGCUCGGUGAGAUUUUGUAGUCUCCAUCGAAUUCCAGUUCGAGUUUGAUGAGAUU ---.....(((((..(((...(((((((((.((((((.....)))))).)))))).)))......)))...))))).......((((((.(((((((((......))))))))))))))) ( -38.40) >DroEre_CAF1 8933 120 + 1 UGUAUAUAGUUACAUUCGCUUCUUUAGAGACUUUCGCUUUCUGCGCAGUUUUUUGUAUGUGAAUUUGCUCGGUGAGAUUUUGUAGUCUUCAUCGAAUUCCUGUUCGAGUUUUAUUAGAUU .(((......)))((((((......(((((((..(((.....))).))))))).....))))))..(((((((((((((....)))).)))))((((....))))))))........... ( -27.40) >DroWil_CAF1 16692 119 + 1 -UUGUACACUUACAAACGUUUCCUCAGCGAUUUUCGCUUUCUGCGUAAUUUUUUAUAUGUAAAUUUGCUCGGUGAGAUUUUGUAGUCUUCAUCGAAUUCCAAUUCGAGUUUAAUAAGAUU -.........((((((.(((((((.(((((.((((((.....))((((....))))..).))).))))).)).)))))))))))(((((.((..(((((......)))))..))))))). ( -22.80) >DroAna_CAF1 19997 114 + 1 ------UACUUACAUGCGUUUUCUUAAACUUUUUCGCUUUCUGCGCAACUUUUUGUAUGAAAGUUUGCUCGGUGAGAUUUUGUAGUCUUCAUCGAAUUCCAGUUCGAGCUUAAUUAGGUU ------.((((.(((((((((....)))).....(((.....))).........))))).))))..(((((((((((((....)))).)))))((((....))))))))........... ( -26.60) >DroPer_CAF1 28623 117 + 1 ---ACUGGCUCACAUGCGUUUCCUCAAGGACUUUCGCUUUCUGCGGAGCUUUUUGUAGGUGAAUUUGCUCGGUGAGAUUUUGUAGUCUCCAUCGAAUUCCAGUUCGAGUUUGAUGAGAUU ---.....(((((..(((...(((((((((.((((((.....)))))).)))))).)))......)))...))))).......((((((.(((((((((......))))))))))))))) ( -38.40) >consensus ___AGUUACUUACAUGCGUUUCCUCAAAGACUUUCGCUUUCUGCGCAGCUUUUUGUAUGUGAAUUUGCUCGGUGAGAUUUUGUAGUCUUCAUCGAAUUCCAGUUCGAGUUUAAUUAGAUU .........(((((((((..(((....)))....(((.....)))........)))))))))....(((((((((((((....))))).))))((((....))))))))........... (-20.42 = -21.23 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:39 2006