Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,318,251 – 2,318,346 |
Length | 95 |
Max. P | 0.937460 |
Location | 2,318,251 – 2,318,346 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 77.64 |
Mean single sequence MFE | -17.17 |
Consensus MFE | -2.78 |
Energy contribution | -3.58 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -2.20 |
Structure conservation index | 0.16 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.937460 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2318251 95 + 23771897 CUUACUGGAAAUUCAAUCUCAUUUGUAGAACAAUUGAUUCCCAGCAGACAGAAUUACAUUUCGUCUCUGCGAGUUUCCCUGCUCUGAAUACUUAA ......((((((((....(((.(((.....))).)))......(((((..(((......)))...)))))))))))))................. ( -21.90) >DroSec_CAF1 67407 93 + 1 CUUACUCGAAAUUCAAUCUCAUUUGCUGAACAAUUGAUUUCCCGCAGACAGAAUUCCAUUUCGUC--UGCGAGUUUCCCUGCUUUGAAUACUUAA .......(((((((....(((.(((.....))).)))......((((((.(((......))))))--)))))))))).................. ( -20.90) >DroSim_CAF1 67452 93 + 1 CUUACUCGAAAUUCAAUCUCAUUUGUUGAACAAUUGAUUCCCCGCAGACAGAAUUCCAUUUCGUC--UGCGAGUUUCCCUGCUUUGAAUACUUAA .......(((((((....(((.(((.....))).)))......((((((.(((......))))))--)))))))))).................. ( -21.70) >DroEre_CAF1 70746 72 + 1 CUUACUUGAAAUUAAAUCCCAAUUAUAGAACAAUUGAU---------------------UUCGUC--UGCGAGUUUCCCUGCUUUGCAUACUUAA .......((((((((..................)))))---------------------)))((.--(((((((......)).))))).)).... ( -9.77) >DroYak_CAF1 70204 72 + 1 CUUACUCGAAAUGAAAUCUCAUUUAUAGAACAAUUGAA---------------------UUCGUC--UGGGAGUUUCCCUGCUUUGAAUGCUCAA .....((.((((((....))))))...))....(((((---------------------((((..--.(((.....))).....)))))..)))) ( -11.60) >consensus CUUACUCGAAAUUCAAUCUCAUUUGUAGAACAAUUGAUU_CC_GCAGACAGAAUU_CAUUUCGUC__UGCGAGUUUCCCUGCUUUGAAUACUUAA .......(((((......(((.(((.....))).))).......................((((....))))))))).................. ( -2.78 = -3.58 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:52 2006