| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,639,582 – 20,639,694 |
| Length | 112 |
| Max. P | 0.591729 |
| Location | 20,639,582 – 20,639,694 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 76.58 |
| Mean single sequence MFE | -26.73 |
| Consensus MFE | -15.17 |
| Energy contribution | -15.28 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.591729 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20639582 112 + 23771897 CGAAAUGAUGAUUGGAGCA--GCUCCAGCUUCAGCUCCAGCUUCAGCUCCAGCUUCAGCUCCGGCAUCAGUAUCAGCAUGUUUGCCACAGCUCC----AACAAUAAGAGGGCACAGCC .((..(((((.((((((((--(((..((((..(((....)))..))))..))))...))))))))))))...)).(((....)))....(((((----........).))))...... ( -35.10) >DroSec_CAF1 12786 88 + 1 CGAAAUGAUGAUUGGAGCA--GCUCCAGC------------------------UUCAGCUACGGCAUCAAUAUCAGCAUUUUUGCCACAGCUCC----AACAAUGAGAGGGCACAGCC .((((((.((((((((((.--......))------------------------))))((....))......)))).))))))((((....(((.----......)))..))))..... ( -24.00) >DroSim_CAF1 16085 88 + 1 CGAAAUGAUGAUUGGAGCA--GCUCCAGC------------------------UUCAGCUACGGCAUCAGUAUCAGCAUUUUUGCCACAGCUCC----AACAAUGAGAGGGCACAGCC .((((((.((((((((((.--......))------------------------))))((....))......)))).))))))((((....(((.----......)))..))))..... ( -24.00) >DroEre_CAF1 1830 93 + 1 CAAAAUGAUGAUUGGAGCA--GCUCCAGCUCCAGCUCCAG------------------CUUCAGCUUCAGUAUCAGCAUU-UUGCCACAGCUCC----AACAAUGAGAGGGCACAGCU .....((((.(((((((((--(((..(((....)))..))------------------))...))))))))))))((...-.((((....(((.----......)))..))))..)). ( -27.30) >DroYak_CAF1 192678 94 + 1 CAAAAUGAUGAUUGGAGCA--GCUCCAGCUCCAGCUUCAA------------------CUUCAGCUACAGCUUCAGCAUUUUUGCCACAGCUCC----AACAAUGAGAGGGCACAGCU .....(((.(.(((((((.--......)))))))).))).------------------....((((...((....)).....((((....(((.----......)))..)))).)))) ( -24.50) >DroPer_CAF1 17529 98 + 1 CAAAACGAUGAUUGGAGCACAGCUCCAGCUCCAGCUUCAG------------------CUCCAGCUCCAGCUCCAGC--UCUGGCCACAGAUCCACACAACAAUGAGAGGGCACAGCC ............((((((...))))))(((..((((..((------------------(....)))..))))..)))--.((((((.....((((........)).)).))).))).. ( -25.50) >consensus CAAAAUGAUGAUUGGAGCA__GCUCCAGCUCCAGCU_CAG__________________CUACAGCAUCAGUAUCAGCAUUUUUGCCACAGCUCC____AACAAUGAGAGGGCACAGCC ...........(((((((...)))))))..................................(((....((....))......(((....(((...........)))..)))...))) (-15.17 = -15.28 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:35 2006