| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,638,189 – 20,638,304 |
| Length | 115 |
| Max. P | 0.630553 |
| Location | 20,638,189 – 20,638,304 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 76.35 |
| Mean single sequence MFE | -24.67 |
| Consensus MFE | -14.35 |
| Energy contribution | -14.88 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.630553 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20638189 115 + 23771897 UAAAUUAUUUAUUUUUCCAUUGAUUUUCUUACA---CUUCUUCUUAGUGUAACAAUUCAAAGCCAGGCCAAGGCGAGUCAUAGUCACAGGCUAUCAUCAGCCAGCCGGCCAGCAUCAA ...................((((..((.(((((---((.......))))))).)).)))).(((.(((...(((..((.(((((.....))))).))..))).))))))......... ( -27.40) >DroSec_CAF1 11451 115 + 1 UAAAUUAUUUAUUUAUCCAUUGAUUUUCUUACA---CUUCUUCUUAGUGUAACAAUUCAAAGCCAGGCCAAGGCGAGUCAUAGUCACUGGUUAUCAUCAGCCAGCCGGCCAGCAUCGA ...................((((..((.(((((---((.......))))))).)).)))).((..((((..(((........))).((((((......))))))..)))).))..... ( -27.70) >DroSim_CAF1 14759 114 + 1 UAAAUU-UUUAUUUACGCAUUAAUUUUCUUACA---CUUCUUCUUAGUGUAACAAUUCAAAGCCAGGCCAAGGCGAGUCAUAGUCACUGGCUAUCAUCAGCCAGCCGGCCAGCAUCGA ......-.........((..........(((((---((.......))))))).............((((..(((........))).((((((......))))))..)))).))..... ( -29.10) >DroEre_CAF1 526 90 + 1 -----------------CUUUAUUUU---UUCC---AUUGUUUUUAGUGUGAUAACUCAAAGCCAGGCCAA-----GUCAUAGUCACGGGCUAUCAUCGAGCAGCCGGCCAGCAUCGA -----------------.........---....---...(((((.(((......))).)))))..((((..-----((.......)).((((.((...))..))))))))........ ( -17.00) >DroYak_CAF1 191310 108 + 1 UAAAAUAUUU-------CUUUGAUUUUAGUACA---CUUCUUUGUAGUGUAAUAAUUCAAAGCCAGGCCAAGGCGAGUCGCAGUCACAGGCUAUCAUCAAGCAGCCGGCCAGCAUCGA ..........-------((((((.((...((((---((.......))))))..)).))))))...((((..(((........)))...((((..........))))))))........ ( -27.80) >DroAna_CAF1 10816 105 + 1 ------------CUACCUUUUAGAUAAAUUAAAAAUCUUCCCUCCAGUGUAAUAAUUCAAAGCCAGGCCAAGGCGAGUC-UACUCACAGGCUAUCAUCAAGCAGCCGGCCAGCAUCGA ------------.................................................((..((((..((((((..-..)))....(((.......))).))))))).))..... ( -19.00) >consensus UAAAUU_UUU__UUA_CCAUUAAUUUUCUUACA___CUUCUUCUUAGUGUAACAAUUCAAAGCCAGGCCAAGGCGAGUCAUAGUCACAGGCUAUCAUCAACCAGCCGGCCAGCAUCGA .............................................................((..((((..(((........)))...((((..........)))))))).))..... (-14.35 = -14.88 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:34 2006