Locus 7735

Sequence ID	3L_DroMel_CAF1
Location	20,636,642 – 20,636,743
Length	101
Max. P	0.929748

overview

Window 6

Location	20,636,642 – 20,636,743
Length	101
Sequences	6
Columns	111
Reading direction	forward
Mean pairwise identity	91.90
Mean single sequence MFE	-26.85
Consensus MFE	-24.20
Energy contribution	-24.20
Covariance contribution	-0.00
Combinations/Pair	1.00
Mean z-score	-1.64
Structure conservation index	0.90
SVM decision value	1.14
SVM RNA-class probability	0.921650
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20636642 101 + 23771897
GUAAUGUGUGCUUAUGAACAUAAUCUUCGGGUGAUUUCGCAUGAAUUAGCGAUGCUAAAUGUCAAAUCGAAACGAUAUCAGUGCAGUUCAAAAGCAUCGCA----------
....(((((((((.(((((...(((....)))(((((.((((...(((((...))))))))).))))).................))))).))))).))))---------- ( -27.30)
>DroPse_CAF1 16314 111 + 1
GUAAUGUGUGCUUAUGAACAUAAUCCGCGGGUGAUUUCGCAUGAAUUAGCGAUGCUAAAUGUCAAAUCGAAAUGAUAUCAGUGCAGUUCAAAAGCAUCGCCUCGACGUGGA
....(((((........))))).((((((.(((....)))........((((((((..((((((........))))))..(.......)...)))))))).....)))))) ( -28.10)
>DroSim_CAF1 11534 101 + 1
GUAAUGUGUGCUUAUGAACAUAAUCUUCGGGUGAUUUCGCAUGAAUUAGCGAUGCUAAAUGUCAAAUCGAAACGAUAUCAGUGCAGUUCAAAAGCAUCGCA----------
....(((((((((.(((((...(((....)))(((((.((((...(((((...))))))))).))))).................))))).))))).))))---------- ( -27.30)
>DroYak_CAF1 189803 101 + 1
GUAAUGUGUGCUUAUGAACAUAAUCUUCUGGUGAUUUCGCAUGAAUUAGCGAUGCUAAAUGUCAAAACGAAACGAUAUCAGUGCAGUUCAAAAGCAUCGCA----------
....(((((((((.(((((........((((((.(((((..(((.(((((...)))))...)))...)))))...))))))....))))).))))).))))---------- ( -25.70)
>DroAna_CAF1 9386 101 + 1
GUAAUGUGUGCUUAUGAACAUAAUCUUUGGGUGAUUUCGCAUGAAUUAGCGAUGCUAAAUGUCAAAUCGAAACGAUAUCAGUGCAGUUCAAAAGCAUCGCG----------
.....((((((((.(((((..((((.......))))..((((((.(((((...)))))...))..((((...))))....)))).))))).))))).))).---------- ( -24.60)
>DroPer_CAF1 15205 111 + 1
GUAAUGUGUGCUUAUGAACAUAAUCCGCGGGUGAUUUCGCAUGAAUUAGCGAUGCUAAAUGUCAAAUCGAAAUGAUAUCAGUGCAGUUCAAAAGCAUCGCCUCGACGUGGA
....(((((........))))).((((((.(((....)))........((((((((..((((((........))))))..(.......)...)))))))).....)))))) ( -28.10)
>consensus
GUAAUGUGUGCUUAUGAACAUAAUCUUCGGGUGAUUUCGCAUGAAUUAGCGAUGCUAAAUGUCAAAUCGAAACGAUAUCAGUGCAGUUCAAAAGCAUCGCA__________
.....((((((((.(((((.................((((........))))(((...(((((..........)))))....)))))))).))))).)))........... (-24.20 = -24.20 +  -0.00)

alignment

secondary structure

dotplot

Window 7

Location	20,636,642 – 20,636,743
Length	101
Sequences	6
Columns	111
Reading direction	reverse
Mean pairwise identity	91.90
Mean single sequence MFE	-23.25
Consensus MFE	-21.16
Energy contribution	-20.72
Covariance contribution	-0.44
Combinations/Pair	1.07
Mean z-score	-1.59
Structure conservation index	0.91
SVM decision value	1.20
SVM RNA-class probability	0.929748
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20636642 101 - 23771897
----------UGCGAUGCUUUUGAACUGCACUGAUAUCGUUUCGAUUUGACAUUUAGCAUCGCUAAUUCAUGCGAAAUCACCCGAAGAUUAUGUUCAUAAGCACACAUUAC
----------((.(.(((((.(((((....((......((((((...(((...(((((...))))).)))..)))))).......)).....))))).)))))).)).... ( -21.82)
>DroPse_CAF1 16314 111 - 1
UCCACGUCGAGGCGAUGCUUUUGAACUGCACUGAUAUCAUUUCGAUUUGACAUUUAGCAUCGCUAAUUCAUGCGAAAUCACCCGCGGAUUAUGUUCAUAAGCACACAUUAC
....(((....))).(((((.(((((....(((.....((((((...(((...(((((...))))).)))..))))))......))).....))))).)))))........ ( -25.70)
>DroSim_CAF1 11534 101 - 1
----------UGCGAUGCUUUUGAACUGCACUGAUAUCGUUUCGAUUUGACAUUUAGCAUCGCUAAUUCAUGCGAAAUCACCCGAAGAUUAUGUUCAUAAGCACACAUUAC
----------((.(.(((((.(((((....((......((((((...(((...(((((...))))).)))..)))))).......)).....))))).)))))).)).... ( -21.82)
>DroYak_CAF1 189803 101 - 1
----------UGCGAUGCUUUUGAACUGCACUGAUAUCGUUUCGUUUUGACAUUUAGCAUCGCUAAUUCAUGCGAAAUCACCAGAAGAUUAUGUUCAUAAGCACACAUUAC
----------((.(.(((((.(((((....((......(((((((..(((...(((((...))))).))).))))))).......)).....))))).)))))).)).... ( -22.82)
>DroAna_CAF1 9386 101 - 1
----------CGCGAUGCUUUUGAACUGCACUGAUAUCGUUUCGAUUUGACAUUUAGCAUCGCUAAUUCAUGCGAAAUCACCCAAAGAUUAUGUUCAUAAGCACACAUUAC
----------.(.(.(((((.(((((....((......((((((...(((...(((((...))))).)))..)))))).......)).....))))).)))))).)..... ( -21.62)
>DroPer_CAF1 15205 111 - 1
UCCACGUCGAGGCGAUGCUUUUGAACUGCACUGAUAUCAUUUCGAUUUGACAUUUAGCAUCGCUAAUUCAUGCGAAAUCACCCGCGGAUUAUGUUCAUAAGCACACAUUAC
....(((....))).(((((.(((((....(((.....((((((...(((...(((((...))))).)))..))))))......))).....))))).)))))........ ( -25.70)
>consensus
__________UGCGAUGCUUUUGAACUGCACUGAUAUCGUUUCGAUUUGACAUUUAGCAUCGCUAAUUCAUGCGAAAUCACCCGAAGAUUAUGUUCAUAAGCACACAUUAC
...........(.(.(((((.(((((....((......((((((...(((...(((((...))))).)))..)))))).......)).....))))).)))))).)..... (-21.16 = -20.72 +  -0.44)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:31 2006