Locus 7731

Sequence ID 3L_DroMel_CAF1
Location 20,621,957 – 20,622,075
Length 118
Max. P 0.500000
window12589

overview

Window 9

Location 20,621,957 – 20,622,075
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.39
Mean single sequence MFE -34.20
Consensus MFE -24.58
Energy contribution -25.10
Covariance contribution 0.52
Combinations/Pair 1.11
Mean z-score -1.66
Structure conservation index 0.72
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20621957 118 - 23771897
AUUGUAUGUCGAGCAUUCCCUUGCAGGUC-UUUCAAAUGAUUCCUUUGCUUUUC-GAGGCGCAUGCGUGUCCAGUGAACUUACAGGUCAAGCAUACGCAUGCCAACGAUAAAGUUGAGGU
.(((...(.(..(((......)))..).)-...)))......((((.(((((((-(..(.((((((((((....(((.((....)))))...)))))))))))..))).))))).)))). ( -33.50)
>DroSec_CAF1 66703 118 - 1
AUUGCAUUUCGAGCAUUCCCUUGCAGGUC-UUUCAAAUGAUUCCUUUGCUUUUC-GAGGCGCAUGCGUGUCCAGUGAACUUACAGGUCAAGCAUACGCAUGCCAACGAUAAAGUUGAGGU
....(((((.(((....((......))..-.))))))))...((((.(((((((-(..(.((((((((((....(((.((....)))))...)))))))))))..))).))))).)))). ( -33.40)
>DroAna_CAF1 88456 114 - 1
AUUAUCUUUC------UCUGUUUAAAAUCUGUUCAAAAAAUGCCUUUGCCUGGCAGAGGCGCAUGCGUGUCCAGUGAACUUACAGGUCAAGCAUACGCAUGCCAACGAUAAAGUUGAGCC
..........------..............((((((.....((((((((...))))))))((((((((((....(((.((....)))))...))))))))))...........)))))). ( -34.60)
>DroSim_CAF1 61612 118 - 1
AUUGCAUUUCGAGCAUUCCCUUGCAGGUU-UUUCAAAUGAUUCCUUUGCUUUUC-GAGGCGCAUGCGUGUCCAGUGAACUUACAGGUCAAGCAUACGCAUGCCAACGAUAAAGUUGAGGU
....(((((.(((.(..((......))..-)))))))))...((((.(((((((-(..(.((((((((((....(((.((....)))))...)))))))))))..))).))))).)))). ( -33.60)
>DroEre_CAF1 59188 118 - 1
AUCGCAUUUCGAGCAUUCCUUUACAGGUC-UUUCAAAUGAUGCCUUUGCUUUUC-GAGGCGCAUGCGUGUCCAGUGAACUUACAGGUCAAGCAUACGCAUGCCAACGAUAAAGUUGAGGU
....(((((.(((....(((....)))..-.))))))))..(((((.(((((((-(..(.((((((((((....(((.((....)))))...)))))))))))..))).))))).))))) ( -35.90)
>consensus
AUUGCAUUUCGAGCAUUCCCUUGCAGGUC_UUUCAAAUGAUUCCUUUGCUUUUC_GAGGCGCAUGCGUGUCCAGUGAACUUACAGGUCAAGCAUACGCAUGCCAACGAUAAAGUUGAGGU
....(((((.(((....((......))....))))))))...(((..((((.....))))((((((((((....(((.((....)))))...))))))))))((((......))))))). (-24.58 = -25.10 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:24 2006