Locus 7725

Sequence ID 3L_DroMel_CAF1
Location 20,619,321 – 20,619,423
Length 102
Max. P 0.604945
window12574

overview

Window 4

Location 20,619,321 – 20,619,423
Length 102
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 76.91
Mean single sequence MFE -33.42
Consensus MFE -19.79
Energy contribution -21.16
Covariance contribution 1.37
Combinations/Pair 1.09
Mean z-score -1.79
Structure conservation index 0.59
SVM decision value 0.14
SVM RNA-class probability 0.604945
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20619321 102 + 23771897
CCCC--U-----AAAGGGCCGUUCUAAUAAGCCGAACUCGCGGAGCGAUCAC---GGGCAAACAGGCGGCGGUCAGCACGCUUGAAAGAGGGCCCAAAGGGAUGGACGAAUA
.(((--(-----...(((((.((((.....(((....((((...))))....---.)))...((((((((.....)).))))))..)))))))))..))))........... ( -38.90)
>DroSec_CAF1 64096 101 + 1
CCCC--------AAAGGGCUGUUCUAAUAAGCCGAACUCGCGGAGCGAUCAC---GGGCAAACAGGCGGCGGUCAGCACGCUUGAAAGAGGGCCCAAAGGGAUGAACGAAUA
.(((--------...(((((.((((.....(((....((((...))))....---.)))...((((((((.....)).))))))..)))))))))...)))........... ( -35.00)
>DroAna_CAF1 85828 99 + 1
GACCUCUACGUCUUAAAGCCGUUCUAAUAAGCCGAACCCGCGGACCGAUCAUGUUGGGCAAACAGAG-----U--------GAAAAAGAGGGCCAGGAGGUAAAAAGGAAUC
..(((.(((.((((...(((.((((......(((......))).....((((.(((......))).)-----)--------))...))))))).)))).)))...))).... ( -22.50)
>DroSim_CAF1 59004 101 + 1
CCCC--------AAAGGGCCGUUCUAAUAAGCCGAACUCGCGGAGCGAUCAC---GAGCAAACAGGCGGCGGUCAGCACGCUUGAAAGAGGGCCCAAAGGGAUGAACGAAUA
.(((--------...(((((.((((.....((((...((((...))))...)---).))...((((((((.....)).))))))..)))))))))...)))........... ( -37.30)
>consensus
CCCC________AAAGGGCCGUUCUAAUAAGCCGAACUCGCGGAGCGAUCAC___GGGCAAACAGGCGGCGGUCAGCACGCUUGAAAGAGGGCCCAAAGGGAUGAACGAAUA
.(((...........(((((.((((......(((......)))...................((((((((.....)).))))))..)))))))))...)))........... (-19.79 = -21.16 +   1.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:10 2006