Locus 7723

Sequence ID 3L_DroMel_CAF1
Location 20,617,727 – 20,617,847
Length 120
Max. P 0.946716
window12571

overview

Window 1

Location 20,617,727 – 20,617,847
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.08
Mean single sequence MFE -33.66
Consensus MFE -28.38
Energy contribution -28.26
Covariance contribution -0.12
Combinations/Pair 1.17
Mean z-score -1.79
Structure conservation index 0.84
SVM decision value 1.37
SVM RNA-class probability 0.946716
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20617727 120 - 23771897
UCUGUUUAUGUACUUUUCGCUGUUUGUGCCCUGAGCAUGUCUAGAAGUUGGCCACUUUAUCAUUUGGCCAUCAUUUGUAUGCGGGGAUGUGCCCGGUGACAUGUGCUUUAUAUAUAAUUU
.........((((...((((((..(..(((((..(((((..((((.(.((((((..........)))))).).))))))))))))).)..)..))))))...)))).............. ( -31.00)
>DroSec_CAF1 62490 120 - 1
UCUGUUUAUGUACUUUUCGCCGUUUGUGCCCUGGGCAUGUCUAGAAGUUGGCCACUUCAUCAUUUGGCCGUCAUUUGUAUGCGGGGAUGUGCUCGGUGACAUGUGCUUUAUAUAUAAUUU
.........((((...(((((((....))...((((((((((.(((((.....))))).........(((.(((....)))))))))))))))))))))...)))).............. ( -33.70)
>DroAna_CAF1 84350 112 - 1
UUCGCU--------CUUUUGUGUUCGUGCCCUGGGCAUGUCUAGAAGUUGGCCACUUCAUCAUUUGGCCAUCAUUUGUAUGCGAGGAUGUGCCCGGUGACAUGUGCUUUAUAUAUAAUUU
......--------.......((.(((((.((((((((((((....(.((((((..........)))))).)..(((....))))))))))))))).).)))).)).............. ( -33.70)
>DroSim_CAF1 57395 120 - 1
UCUGUUUAUGUACUUUUCGCCGUUUGUGCCCUGGGCAUGUCUAGAAGUUGGCCACUUCAUCAUUUGGCCAUCAUUUGUAUGCGGGGAUGUGCCCGGUGACAUGUGCUUUAUAUAUAAUUU
.........((((...(((((((....))...((((((((((....(.((((((..........)))))).)..(((....))))))))))))))))))...)))).............. ( -35.30)
>DroEre_CAF1 54957 119 - 1
UCCGUUUAUGUACUUUUCGCCGUUGGUGCCCUGGGUAUGUCUAGAAGUUGGCCACUUCAUCAUUUGGCCAUCAUUUGUAUGCGG-GAUGUGCCCGGUGACAUGUGCUUUAUUUAUAAUUU
.........((((...((((((..((..(((((.((((.....(((..((((((..........))))))...))))))).)))-)..)..))))))))...)))).............. ( -34.60)
>consensus
UCUGUUUAUGUACUUUUCGCCGUUUGUGCCCUGGGCAUGUCUAGAAGUUGGCCACUUCAUCAUUUGGCCAUCAUUUGUAUGCGGGGAUGUGCCCGGUGACAUGUGCUUUAUAUAUAAUUU
.....................((.(((((.((((((((((((....(.((((((..........)))))).)..(((....))))))))))))))).).)))).)).............. (-28.38 = -28.26 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:06 2006