| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,616,322 – 20,616,438 |
| Length | 116 |
| Max. P | 0.922183 |
| Location | 20,616,322 – 20,616,438 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 88.93 |
| Mean single sequence MFE | -30.50 |
| Consensus MFE | -23.32 |
| Energy contribution | -25.20 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.76 |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.922183 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20616322 116 - 23771897 -CGAUUC---CGAUUUCGAUUCGAUUUCCAGACAUGGCCCUAAAAAAGAAACUAGUUUUGCAUACAUAAACAUGGCCCUGUCUGCACUACUUCCCUUCGGGAUAGCCUCUUGUCUGGGGA -(((...---((....))..))).(..(((((((.(((...............(((..((((.(((............))).))))..)))..((....))...)))...)))))))..) ( -31.30) >DroSec_CAF1 61112 116 - 1 -CGAUUC---CGAUUCCGAAUCGAUUCCCAGACAUGGCCCUAAAAAAGAAACUAGUUUUGCAUACAUAAACAUGGCCCUGUCUGCACUACUUCCCUUCGGGAUAGCCUCUUGUCUGGGGA -((((((---.......)))))).((((((((((.(((...............(((..((((.(((............))).))))..)))..((....))...)))...)))))))))) ( -36.70) >DroAna_CAF1 82937 110 - 1 CCGAUUCAUUCGAU-CCCAUUCGAUUCCCAGACAUGGCCCUAAA-AAGAAACUAGUUUUGCAUACAUAAACAUGACCAUGUCUGCACUACUUCCCUUCGGGAUAGCCUCCUG-------- ((((.....((((.-.....))))....(((((((((..((...-.))......((((((....)).))))....)))))))))............))))............-------- ( -21.70) >DroSim_CAF1 55993 116 - 1 -CGAUUC---CGAUUCCGAAUCGAUUCCCAGACAUGGCCCUAAAAAAGAAACUAGUUUUGCAUACACAAACAUGGCCCUGUCUGCACUACUUCCCUUCGGGAUAGACACUUGUCUGGGGA -((((((---.......)))))).((((((((((.((((((.....))......((((((....)).))))..)))).((((((.......((((...))))))))))..)))))))))) ( -34.71) >DroEre_CAF1 53537 108 - 1 -CGAUUC---CGAU------UCGAUUCCCAGACAUAGCCCUAAA-AAGAAACUAGUUUUGCAUACAUAAACAUGGC-CUGUCUGCACUACUUCCCUUCGGGAUUGCCUCUUGUCUGGGGA -(((...---....------))).((((((((((..((......-........(((..((((.(((..........-.))).))))..)))..((....))...))....)))))))))) ( -28.10) >consensus _CGAUUC___CGAUUCCGAAUCGAUUCCCAGACAUGGCCCUAAAAAAGAAACUAGUUUUGCAUACAUAAACAUGGCCCUGUCUGCACUACUUCCCUUCGGGAUAGCCUCUUGUCUGGGGA ..........(((.......))).((((((((((.(((...............(((..((((.(((............))).))))..)))..((....))...)))...)))))))))) (-23.32 = -25.20 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:04 2006