Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,616,019 – 20,616,139 |
Length | 120 |
Max. P | 0.958499 |
Location | 20,616,019 – 20,616,139 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.81 |
Mean single sequence MFE | -23.05 |
Consensus MFE | -20.23 |
Energy contribution | -20.73 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.08 |
Mean z-score | -1.75 |
Structure conservation index | 0.88 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845604 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20616019 120 + 23771897 UAUCACAAACUUCGUGGAAACCCAUAUCUUCUGAAAUAUUUCGGUUCCCAUACCCAAUAAUGGAUUUCCACAUCCCUGGCGCUAUUGUGCAUGUCACUUGCUUUCCUUUUGUUUGCUUCU .....(((((...(((((((.((((.......(((....)))(((......))).....)))).))))))).......((((....))))....................)))))..... ( -25.80) >DroSec_CAF1 60821 120 + 1 UAUCACAAACUUCGUGGAAGCCCAUAUCUUCUGAAAUAUUUCGGUUCCCAUAGCCAAUAAUGGAUUUCCACAUCCCUGGCGCUAUUGUGCAUGUCACUUGCUUUCCUUUUGUUUGCUUCU .....(((((...((((((..((((.......(((....)))((((.....))))....))))..)))))).......((((....))))....................)))))..... ( -26.40) >DroSim_CAF1 55702 120 + 1 UAUCACAAACUUCGUGGAAACCCAUAUCUUCUGAAGUAUUUCGGUUCCCAUAGCCAAUAAUGGAUUUCCACAUCCCUGGCGCUAUUGUGCAUGUCACUUGCUUUCCUUUUGUUUGCUUCU .....(((((...(((((((.((((.((....))........((((.....))))....)))).))))))).......((((....))))....................)))))..... ( -26.30) >DroEre_CAF1 53263 110 + 1 AACUAUAAACUUCGUAGAAACCCAUA----------UAUUUCGGUUCCCAUAGCCAAUAAUAGAUUUCCACCUCCCUGGCGCUAUUGUGCAUGUCACUUGCUUUCCUUUUGUUUGCUUCU .............(((((........----------......((((.....)))).(((((((....(((......)))..)))))))(((.......)))..........))))).... ( -13.70) >consensus UAUCACAAACUUCGUGGAAACCCAUAUCUUCUGAAAUAUUUCGGUUCCCAUAGCCAAUAAUGGAUUUCCACAUCCCUGGCGCUAUUGUGCAUGUCACUUGCUUUCCUUUUGUUUGCUUCU .....(((((...(((((((.((((.((....))........((((.....))))....)))).))))))).......((((....))))....................)))))..... (-20.23 = -20.73 + 0.50)
Location | 20,616,019 – 20,616,139 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.81 |
Mean single sequence MFE | -29.57 |
Consensus MFE | -25.80 |
Energy contribution | -26.55 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.06 |
Mean z-score | -2.23 |
Structure conservation index | 0.87 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958499 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20616019 120 - 23771897 AGAAGCAAACAAAAGGAAAGCAAGUGACAUGCACAAUAGCGCCAGGGAUGUGGAAAUCCAUUAUUGGGUAUGGGAACCGAAAUAUUUCAGAAGAUAUGGGUUUCCACGAAGUUUGUGAUA ....((((((....((...((..(((.....)))....)).)).....(((((((((((((.(((.(((......)))(((....)))....))))))))))))))))..)))))).... ( -32.80) >DroSec_CAF1 60821 120 - 1 AGAAGCAAACAAAAGGAAAGCAAGUGACAUGCACAAUAGCGCCAGGGAUGUGGAAAUCCAUUAUUGGCUAUGGGAACCGAAAUAUUUCAGAAGAUAUGGGCUUCCACGAAGUUUGUGAUA ....((((((....((...((..(((.....)))....)).)).....(((((((..((((.(((..((..((...))(((....)))))..)))))))..)))))))..)))))).... ( -29.20) >DroSim_CAF1 55702 120 - 1 AGAAGCAAACAAAAGGAAAGCAAGUGACAUGCACAAUAGCGCCAGGGAUGUGGAAAUCCAUUAUUGGCUAUGGGAACCGAAAUACUUCAGAAGAUAUGGGUUUCCACGAAGUUUGUGAUA ....((((((....((...((..(((.....)))....)).)).....(((((((((((((.(((..((..((...........))..))..))))))))))))))))..)))))).... ( -33.00) >DroEre_CAF1 53263 110 - 1 AGAAGCAAACAAAAGGAAAGCAAGUGACAUGCACAAUAGCGCCAGGGAGGUGGAAAUCUAUUAUUGGCUAUGGGAACCGAAAUA----------UAUGGGUUUCUACGAAGUUUAUAGUU ..((((.............((..(((.....)))....))(((((..((((....))))....)))))..((((((((.(....----------..).))))))))....))))...... ( -23.30) >consensus AGAAGCAAACAAAAGGAAAGCAAGUGACAUGCACAAUAGCGCCAGGGAUGUGGAAAUCCAUUAUUGGCUAUGGGAACCGAAAUAUUUCAGAAGAUAUGGGUUUCCACGAAGUUUGUGAUA ....((((((.........((..(((.....)))....))(((((....((((....))))..)))))..((((((((...(((((......))))).))))))))....)))))).... (-25.80 = -26.55 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:03 2006