Locus 772

Sequence ID 3L_DroMel_CAF1
Location 2,313,105 – 2,313,195
Length 90
Max. P 0.877166
window1190

overview

Window 0

Location 2,313,105 – 2,313,195
Length 90
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 77.64
Mean single sequence MFE -17.54
Consensus MFE -11.39
Energy contribution -10.73
Covariance contribution -0.66
Combinations/Pair 1.38
Mean z-score -1.72
Structure conservation index 0.65
SVM decision value 0.90
SVM RNA-class probability 0.877166
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2313105 90 - 23771897
UUAUUAAGCCAUGGCUAUACUUAGCACCUAACUACCCGCCAUGAUGACACUGCCAGUGGCAGAAUUCUGUGUCAUUAAUCUCCCAUUCCA------
.........((((((..((.((((...)))).))...))))))(((((((.(((...)))((....)))))))))...............------ ( -19.10)
>DroPse_CAF1 78066 96 - 1
UUAUUGUGCUCUUUUCAAACAGGGUACCGUAAUGCUCGUCAUUAUGACAGUGUCACUAACAGAAUCUUCUGUCAUUAAUCUACCAUCCCCAUCUCC
.....(((((((........))))))).((.(((((.(((.....)))))))).))..(((((....)))))........................ ( -16.90)
>DroSec_CAF1 62280 90 - 1
UUAUUAAGCCAUGGCUAUACUUAGCACAUAAAUACCCGCCAUGAUGACACUGCCAGUCGCAGAAUCCUGUGUCAUUAAUCUCCCAUUCCA------
..........(((((((....)))).)))............((((((((((((.....))).......))))))))).............------ ( -16.21)
>DroSim_CAF1 62283 90 - 1
UUAUUAAGCCAUGGCUAUACUUAGCACAUAAAUACCCGCCAUGAUGACACUGCCAGUGGCAGAAUCCUGUGUCAUUAAUCUCCCAUUCCA------
..........(((((((....)))).)))............(((((((((((((...)))).......))))))))).............------ ( -18.51)
>DroYak_CAF1 65027 90 - 1
UUAUUAAGACAUGGCUAUACUUAGUACAUAAAUACCAGCCAUGAUGACACUGUCAGUGGCAGAAUCCUGUGUCAUUAAUCUCCCAUUCCA------
......((((((((((.((.(((.....))).))..)))))))((((((((((.....))).......)))))))...))).........------ ( -17.61)
>DroPer_CAF1 77553 96 - 1
UUAUUGUGCUCUUUUCAAACAGGGUACCGUAAUGCUCGUCAUUAUGACAGUGUCACUAACAGAAUCUUCUGUCAUUAAUCUACCAUCCCCAUCUCC
.....(((((((........))))))).((.(((((.(((.....)))))))).))..(((((....)))))........................ ( -16.90)
>consensus
UUAUUAAGCCAUGGCUAUACUUAGCACAUAAAUACCCGCCAUGAUGACACUGCCAGUGGCAGAAUCCUGUGUCAUUAAUCUCCCAUUCCA______
.............((((....))))................((((((((((((.....))).......)))))))))................... (-11.39 = -10.73 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:51 2006