Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,615,538 – 20,615,750 |
Length | 212 |
Max. P | 0.642903 |
Location | 20,615,538 – 20,615,639 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.29 |
Mean single sequence MFE | -36.60 |
Consensus MFE | -29.92 |
Energy contribution | -30.48 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.17 |
Mean z-score | -1.34 |
Structure conservation index | 0.82 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.642903 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20615538 101 + 23771897 --GCUGCUCGGGCCGGAUGUGGUGACAUUUGGUCGGGCUAGCCUGGCCAUCAGCUCUAGCUCU------AGCCGCUCCCGCCCUUUUUU----UCUCUCUUGGCCCUAACA-------AA --.......((((.(((.(((((......((((((((....))))))))..(((....)))..------.)))))))).))))......----..................-------.. ( -35.50) >DroSec_CAF1 60315 105 + 1 --GCUGCUCGGGCCGGAUGUGGUGACAUUUGGUCGGGCUAGCCUGGCCAUCAGCUCUAGCUCUAGCCCUAGCCGCUCCCGCCCUU--UU----UCUCUCUUGGCCCUAACA-------AA --.......((((.(((.((((((((.....)))(((((((.((((.........))))..)))))))..)))))))).))))..--..----..................-------.. ( -36.90) >DroAna_CAF1 82242 111 + 1 GCGCGACUCAGGCCGGAUGUGGUGACAUUUGGUCGGGCUGGCCUAGCCAGCUAUUCG---------GAUGGCCACUCUCUCUAUUGGUUGCAGUCCCUUAUGUCCCUAACACUAUGUAUG ..(((((.(((...(((.(((((..(((((((...(((((((...)))))))..)))---------)))))))))..)))...))))))))............................. ( -35.70) >DroSim_CAF1 55195 106 + 1 --GCUGCUCGGGCCGGAUGUGGUGACAUUUGGUCGGGCUAGCCUGGCCAUCAGCUCUAGCUCUAGCCCUAGCCGCUCCCGCCCUUU-UU----UCUCUCUUGGCCCUAACA-------AA --.......((((.(((.((((((((.....)))(((((((.((((.........))))..)))))))..)))))))).))))...-..----..................-------.. ( -36.90) >DroEre_CAF1 52844 99 + 1 --GCUGCUCGGGCCGGAUGUGGUGACAUUUGGUCGGGCUGGCCUGGCCAUCAGCUCUAGCUCU------AGCUGCUCCCGCCCUU--UU----UCUCUCUGGGCCCUAACA-------AA --((.(((.((((..((.(((....))).((((((((....)))))))).....))..)))).------))).))....((((..--..----.......)))).......-------.. ( -38.00) >consensus __GCUGCUCGGGCCGGAUGUGGUGACAUUUGGUCGGGCUAGCCUGGCCAUCAGCUCUAGCUCU_____UAGCCGCUCCCGCCCUU__UU____UCUCUCUUGGCCCUAACA_______AA .........((((.(((.(((((......((((((((....))))))))..(((....))).........)))))))).))))..................................... (-29.92 = -30.48 + 0.56)
Location | 20,615,639 – 20,615,750 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.14 |
Mean single sequence MFE | -26.42 |
Consensus MFE | -10.72 |
Energy contribution | -11.64 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.15 |
Mean z-score | -1.86 |
Structure conservation index | 0.41 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557853 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20615639 111 + 23771897 UAUUGGUUGCAAUAAAAAGCUAAUAAAGAAUAUGGAAAG-GCAAAUGCCUGGCUGACAAGUGCAUGGAG-CCCAGGGAUGGAAAAUAGUUUUUCCGUGUAAAGAGCUAUU-------UGA ((((((((.........))))))))....((((((((((-((..((.(((((((..((......)).))-.))))).))........))))))))))))...........-------... ( -26.50) >DroSec_CAF1 60420 118 + 1 UAUUGGUUGCAAUAAAAAGCUAAUAAAGAACAUGGAAAG-ACAAAUGCCUGGCUGACAAGUGCAUGGAG-GCCAGGGAUGGAAAAUAGUUUUUCCUCGUAAAGAGCCAUUUAACAUUUGG ((((((((.........))))))))..............-.(((((((((((((..((......))..)-))))))((.((((((....))))))))................)))))). ( -32.00) >DroAna_CAF1 82353 91 + 1 UAUUGUUGGUAAUAAAAAGCUAAUAAAGAAAAUGGUUAG-ACAAAUGUCUGACUGACAAGUGCUUGGUUUGCCAGGGCUGGAAUACAAUUAG---------------------------- ..((((((((........)))))))).......((((((-((....))))))))....(((.(((((....)))))))).............---------------------------- ( -22.70) >DroSim_CAF1 55301 119 + 1 UAUUGGUUGCAAUAAAAAGCUAAUAAAGAAUAUGGAAAGAACAAAUGCCUGGCUGACAAGUGCAUGGUG-CCCAGGGAUGGAAAAUAGUUUUUCCUCGUAAAGAGCCAUUUAACAUUUGG ((((((((.........))))))))................((((((((((((...((......))..)-.)))))((.((((((....))))))))................)))))). ( -24.70) >DroEre_CAF1 52943 115 + 1 UAUUGGUUGCAAUAAAAAGCUAAUAAAGAAUAUGGAAAG-GCAAAUGCU--GCUGACAAGUGCAUGGAG-CCCAGGGAUGGGUAAUAGUU-UUCCUAGUACAGAGGCAUUCUAAUUUUGG ((((((((.........)))))))).(((((.(((((.(-((....)))--(((.....((((..((((-((((....))))).......-.)))..))))...))).)))))))))).. ( -26.20) >consensus UAUUGGUUGCAAUAAAAAGCUAAUAAAGAAUAUGGAAAG_ACAAAUGCCUGGCUGACAAGUGCAUGGAG_CCCAGGGAUGGAAAAUAGUUUUUCCUCGUAAAGAGCCAUU__A__UUUGG ((((((((.........))))))))........((((((.((..((((...(((....)))))))......(((....)))......))))))))......................... (-10.72 = -11.64 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:01 2006