Locus 7718

Sequence ID 3L_DroMel_CAF1
Location 20,615,357 – 20,615,458
Length 101
Max. P 0.500000
window12564

overview

Window 4

Location 20,615,357 – 20,615,458
Length 101
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 81.77
Mean single sequence MFE -31.98
Consensus MFE -18.62
Energy contribution -18.58
Covariance contribution -0.04
Combinations/Pair 1.14
Mean z-score -1.81
Structure conservation index 0.58
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20615357 101 - 23771897
ACGA-----------------AAUG-AGCGGACAAA-AAGUGCCAGCAGUUGGUCGACAAAUGCUGCACUUGCCCCGGGGAAAAAGUCUCAGUCCUCCUGCAUUUGCCUUGAUUUCGUAU
((((-----------------(((.-((.((.((((-((((((.((((.(((.....))).))))))))))((...(((((...........)))))..)).)))))))).))))))).. ( -33.20)
>DroSec_CAF1 60134 101 - 1
ACGA-----------------AAUG-AGCGGACAAA-AAGUGCCAACAGUUGGUCGACAAAUGCUGCACUUGCCCCGGGGAAAAAGUCUCAGUCCUCCUGCAUUUGCCUUGAUUUCGUAU
((((-----------------(((.-((.((.((((-((((((...((.(((.....))).))..))))))((...(((((...........)))))..)).)))))))).))))))).. ( -27.10)
>DroAna_CAF1 82013 109 - 1
ACAAACGUCACGGCCCGGACAAAUGUGGCGGACAAA-AAGUGCCAACAGUUGUUCAACAAAUGCUGCACUUGCCCCGGGCUCCAGAGCCAAG----------ACUGCUUUGAUUUCGUAU
....(((....(((((((.(((.((..((((((...-..)).))....(((....)))....))..)).)))..))))))).((((((....----------...))))))....))).. ( -33.90)
>DroSim_CAF1 55014 101 - 1
ACGA-----------------AAUG-AGCGGACAAA-AAGUGCCAGCAGUUGGUCGACAAAUGCUGCACUUGCCCCGGGGAAAAAGUCUCAGUCCUCCUGCAUUUGCCUUGAUUUCGUAU
((((-----------------(((.-((.((.((((-((((((.((((.(((.....))).))))))))))((...(((((...........)))))..)).)))))))).))))))).. ( -33.20)
>DroEre_CAF1 52663 101 - 1
ACGA-----------------AAUG-AGCGAACAAAAAAGUGCCAGCAGUUGGUCGACAAAUGCUGCACUUGCC-CGGGGAAAAAGUCUCUGUCCUCCUGCAUUUGCCUUGAUUUCGUAU
((((-----------------(((.-((((((.....((((((.((((.(((.....))).))))))))))((.-.(((((...((...)).)))))..)).)))))..).))))))).. ( -32.50)
>consensus
ACGA_________________AAUG_AGCGGACAAA_AAGUGCCAGCAGUUGGUCGACAAAUGCUGCACUUGCCCCGGGGAAAAAGUCUCAGUCCUCCUGCAUUUGCCUUGAUUUCGUAU
...........................(((((.....((((((.((((.(((.....))).)))))))))).....((((......)))).......................))))).. (-18.62 = -18.58 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:59 2006