| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,614,297 – 20,614,402 |
| Length | 105 |
| Max. P | 0.629178 |
| Location | 20,614,297 – 20,614,402 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 91.38 |
| Mean single sequence MFE | -27.30 |
| Consensus MFE | -20.68 |
| Energy contribution | -20.79 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.629178 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20614297 105 - 23771897 GCGGGGGGAGAUAGGUACAGGUACA-----UGAAUGUAAGUAGAAGUACGGGUAUAAGUAUUUUAUGAUGCAACCUGUAUCUGCAAGGUUUUUCCUAUGCAUUUAUUAAA (((.((((((((((((((((((..(-----((..((((........))))..)))..(((((....))))).)))))))))))......))))))).))).......... ( -29.50) >DroSec_CAF1 59070 110 - 1 GCGGGGGGAGAUAGGUACAGGUACAUGUAAUGAAUGUAAGCAGAAGUAAGGGUAUAAGUAUUUUAUGAUGCAACGUGUAUCUGCAAGGUUUUUCCUAUGCAUUUAUUAAA ((((((..((((.....(((((((((((......((((..(........)..)))).(((((....))))).)))))))))))....))))..))).))).......... ( -29.20) >DroSim_CAF1 53964 99 - 1 GCGGGGGGAGAUAGGUACA-----------UGAAUGUAAGUAGAAGUAAGGGUAUAAGUAUUUUAUGAUGCAACCUGUAUCUGCAAGGUUUUUCCUAUGCAUUUAUUAAA ((((((..((((...((((-----------....)))).(((((.....((((....(((((....))))).))))...)))))...))))..))).))).......... ( -23.20) >consensus GCGGGGGGAGAUAGGUACAGGUACA_____UGAAUGUAAGUAGAAGUAAGGGUAUAAGUAUUUUAUGAUGCAACCUGUAUCUGCAAGGUUUUUCCUAUGCAUUUAUUAAA ((((((..((((...((((...............)))).(((((.....((((....(((((....))))).))))...)))))...))))..))).))).......... (-20.68 = -20.79 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:56 2006