Locus 7710

Sequence ID 3L_DroMel_CAF1
Location 20,610,274 – 20,610,372
Length 98
Max. P 0.817213
window12543

overview

Window 3

Location 20,610,274 – 20,610,372
Length 98
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 88.54
Mean single sequence MFE -30.73
Consensus MFE -25.89
Energy contribution -26.12
Covariance contribution 0.22
Combinations/Pair 1.09
Mean z-score -2.08
Structure conservation index 0.84
SVM decision value 0.67
SVM RNA-class probability 0.817213
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20610274 98 + 23771897
---------CACACAAUGGGAGACCGGAUCCCAACUCU--CGCC-----------AAGCCGGCAUGCUGAUAAUUUGAGUAUGCGAAUAGACGAGCCAACACAUGGCUAUAUGGCAACUA
---------.......(((((.......))))).....--.(((-----------(.....(((((((.(.....).))))))).........(((((.....)))))...))))..... ( -29.70)
>DroSec_CAF1 55081 98 + 1
---------CACACAAUGGGAGACCGGAUCCCAACUCU--CGCC-----------AAGCCGGCAUGCUGAUAAUUUGAGUAUGCGAAUAGACGAGCCAACACAUGGCUAUAUGGCAACUA
---------.......(((((.......))))).....--.(((-----------(.....(((((((.(.....).))))))).........(((((.....)))))...))))..... ( -29.70)
>DroAna_CAF1 76954 120 + 1
GAAGAACCCCACACAAUGGGAGACCGGAUCCAAGCUCUCUCGCCAGUUAGCCAGCGAGCCAGCAUACUGAUAAUUUGAGUAUGCGAAUAGACAAACCAACACAUGGCUAUAUGGCGACUA
.................((((((.(........).))))))...((((.((((...((((((((((((.(.....).))))))).....(......)......)))))...)))))))). ( -33.90)
>DroSim_CAF1 49973 98 + 1
---------CACACAAUGGGAGACCGGAUCCCAACUCU--CGCC-----------AAGCCGGCAUGCUGAUAAUUUGAGUAUGCGAAUAGACGAGCCAACACAUGGCUAUAUGGCAACUA
---------.......(((((.......))))).....--.(((-----------(.....(((((((.(.....).))))))).........(((((.....)))))...))))..... ( -29.70)
>DroEre_CAF1 47594 98 + 1
---------CACACAAUGGGAGACCGGAUCCCAACUCU--CGCC-----------GUGCCGGCAUGCUGAUAAUUUGAGUAUGAGCAUAGACGAGCCAACACAUGGCUAUAUGGCAACUA
---------.......(((((.......))))).....--.(((-----------((((...((((((.(.....).)))))).)))).....(((((.....)))))....)))..... ( -29.40)
>DroYak_CAF1 598 98 + 1
---------CACACAAUGGGAGACCGGAUCCCAACUCU--CGCC-----------AUGCCGGCAUGCUGAUAAUUUGAGUAUGCGAAUAGACGAGCCAACACAUGGCUUUAUGGCAAGUA
---------.......(((((.......))))).....--.(((-----------(((...(((((((.(.....).)))))))........((((((.....))))))))))))..... ( -32.00)
>consensus
_________CACACAAUGGGAGACCGGAUCCCAACUCU__CGCC___________AAGCCGGCAUGCUGAUAAUUUGAGUAUGCGAAUAGACGAGCCAACACAUGGCUAUAUGGCAACUA
................(((((.......)))))........................(((((((((((.(.....).))))))).........(((((.....)))))...))))..... (-25.89 = -26.12 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:39 2006