Locus 771

Sequence ID 3L_DroMel_CAF1
Location 2,308,135 – 2,308,230
Length 95
Max. P 0.500000
window1189

overview

Window 9

Location 2,308,135 – 2,308,230
Length 95
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 73.18
Mean single sequence MFE -21.52
Consensus MFE -9.42
Energy contribution -9.54
Covariance contribution 0.11
Combinations/Pair 1.33
Mean z-score -1.75
Structure conservation index 0.44
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2308135 95 + 23771897
AUAAACAAGU-----------G-CUCAAUAGAA----UACACUGCCGUUCCGUGAAUAUGUUUGCCAUGAGUAUAUGUUUUU------UUAUGGUAAGCAGAGGAUUUUUCUCUGUU
..(((((.((-----------(-((((...(((----(........)))).(..((....))..)..))))))).)))))..------........(((((((((...))))))))) ( -21.20)
>DroPse_CAF1 70976 113 + 1
CUUAACAAGUCGAAAGAUACAU-UUCUAUAGAUGUGUAAGGCUGUUAUUUU-CAAGGAUCUUU--UAUGGGAAUAUAAUUUAAGUACAUUAAAAAAAAAAAAGGAUGUACCCUCGUG
..(((((.(((.....((((((-(......)))))))..))))))))....-..(((.((((.--...))))...........(((((((.............)))))))))).... ( -19.12)
>DroSec_CAF1 57280 94 + 1
AUAAAAAAGU-----------G-UUCAAUAGAA----UACACUGUCGUUCC-UAAAAAUGUUUGCCAUGAGUAUAUGUUUUU------UUAUGGUAAGCAGAAGAUUUUCCUUUGUU
........((-----------(-(((....)))----)))...........-......(((((((((((((..........)------))))))))))))((((......))))... ( -20.80)
>DroSim_CAF1 57252 94 + 1
AUAAACAAGU-----------G-UUCAAUAGAA----UACACUGCCGUUCC-UAAAAAUGUUUGCCAUGAGUAUAUGUUUUU------UUAUGGUAAGCACUGGAUUUUCCUCUGUU
...((((.((-----------(-(((....)))----)))........(((-......(((((((((((((..........)------))))))))))))..)))........)))) ( -21.80)
>DroEre_CAF1 60605 94 + 1
AUAAACAAGU-----------UUUUCCAUAGAA----AAGACUGCCGUUUC-UA-AAAUGUUUGCCAUGAGUAUAUGUUUUU------UUAUGGCAAGCCCAGGAUUUCCGUCUGUU
...((((..(-----------...(((.(((((----(.(.....).))))-))-....((((((((((((..........)------)))))))))))...))).....)..)))) ( -21.10)
>DroYak_CAF1 59980 94 + 1
AUAAACAAGU-----------U-UUCCAUAGAA----AAGACUGACGUUUC-CAAAAAUGUUUGCCAUGAGUAUAUGUUUUU------UUAUGGCAAGCACAGGAUUUCCGUCUGUU
...(((((((-----------(-((........----))))))((((..((-(.....(((((((((((((..........)------))))))))))))..)))....)))))))) ( -25.10)
>consensus
AUAAACAAGU___________G_UUCAAUAGAA____AACACUGCCGUUCC_UAAAAAUGUUUGCCAUGAGUAUAUGUUUUU______UUAUGGUAAGCACAGGAUUUUCCUCUGUU
..........................................................((((((((((((..................))))))))))))................. ( -9.42 =  -9.54 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:50 2006