Locus 7706

Sequence ID 3L_DroMel_CAF1
Location 20,607,780 – 20,607,877
Length 97
Max. P 0.845094
window12533

overview

Window 3

Location 20,607,780 – 20,607,877
Length 97
Sequences 4
Columns 97
Reading direction forward
Mean pairwise identity 87.83
Mean single sequence MFE -38.20
Consensus MFE -25.84
Energy contribution -28.40
Covariance contribution 2.56
Combinations/Pair 1.07
Mean z-score -2.63
Structure conservation index 0.68
SVM decision value 0.77
SVM RNA-class probability 0.845094
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20607780 97 + 23771897
GCCAGACUGGCAGCAGGCAGCGGGUCUUGGGUAUUGGGUAUUGGGUCUUGGUUUUCUGAUUCCGAGGCUCAAUAUCCGACUCCAUCUCCGACUCAGU
(((.....))).((.....))(((((...((..((((((((((((((((((..........))))))))))))))))))..))......)))))... ( -40.60)
>DroSec_CAF1 52657 90 + 1
GCCAGACUGGCAGCAGGCAGCGGGUCUUGGGUA-------UUGGGUCUUGGUUUUCUGAUUCCGAGGCUCAAUAUCCGACUCCAUCUCCGACUCAGU
(((.....)))((..((.((..((..(((((((-------(((((((((((..........))))))))))))))))))..))..))))..)).... ( -37.30)
>DroSim_CAF1 47452 90 + 1
GCCAGACUGGCAGCAGGCAGCGGGUCUUGGGUA-------UUGGGUCUUGGUUUACUGAUUCCGAGGCUCAAUAUCCGACUCCAUCUCCGACUCAGU
(((.....)))((..((.((..((..(((((((-------(((((((((((..........))))))))))))))))))..))..))))..)).... ( -37.30)
>DroEre_CAF1 45146 97 + 1
GCCAGACUGGCAGCAGGCAGCAGGCAGCAGGCUGCGGGUCUUGGGUCUUGGUUUUCUGAUUCCGAGGCUCAAUAUCCGACUCCAUGUCAUACUCAGC
(((.....))).((((.(.((.....)).).))))((((.(((((((((((..........))))))))))).))))(((.....)))......... ( -37.60)
>consensus
GCCAGACUGGCAGCAGGCAGCGGGUCUUGGGUA_______UUGGGUCUUGGUUUUCUGAUUCCGAGGCUCAAUAUCCGACUCCAUCUCCGACUCAGU
(((.....))).((.....))(((((...((...(((((.(((((((((((..........))))))))))).)))))...))......)))))... (-25.84 = -28.40 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:29 2006