| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,607,125 – 20,607,232 |
| Length | 107 |
| Max. P | 0.806191 |
| Location | 20,607,125 – 20,607,232 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.41 |
| Mean single sequence MFE | -22.37 |
| Consensus MFE | -16.00 |
| Energy contribution | -17.44 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.806191 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20607125 107 + 23771897 CCAUUAUUAUAUUUUGCAAGUCAAACAAAUAAACGAAA---------UAAAUCAAUGCGCGGGUCCGCCGACGACGACCAACGCAUUCGAUAUUGGAAAAUAUCGUUAUGGAAAAC---- ((((.((.(((((((.((((((............((..---------....))((((((..((((((....))..))))..)))))).))).))).))))))).)).)))).....---- ( -26.50) >DroSec_CAF1 51996 104 + 1 ACAU---UAGAUUAUGCAAGUCAAACAAAUAAUCGAAA---------UAAAUCAAUGCGCGGGUCCGCCGACGACGACCAACGCAUUCGAUAUUGGAAAAUAUCGUUAUGGAAAAC---- ....---..((((((.............))))))....---------....((((((((..((((((....))..))))..))))))(((((((....))))))).....))....---- ( -24.12) >DroAna_CAF1 73960 112 + 1 GCAU---UAGAUUAUGCAAGCAAAGCAAAUAAACCAAAUAAAUCAAAUAAAUCAAUGCGCGGGUCC-----CACCGACCAACGCAUUCGAUAUAGGAAAAUAUUGUUAUGGAAAAUCGGU ....---..((((.(((.......)))......((((((((......((.(((((((((..((((.-----....))))..)))))).))).))........))))).)))..))))... ( -23.24) >DroSim_CAF1 46792 104 + 1 ACAU---UAGAUUAUGCAAGUCAAACAAAUAAACGAAA---------UAAAUCAAUGCGCAAGUCCGCCGACGACGACCAACGCAUUCGAUAUUGGAAAAUAUCGUUAUGGAAAAC---- .(((---..((((.....)))).........(((....---------......((((((...(((((....))..)))...)))))).((((((....))))))))))))......---- ( -16.00) >DroEre_CAF1 44512 104 + 1 ACAU---UAGAUUAUGCAAGUCAAACAAAUAAACGAAA---------UAAAUCAAUGCGCGGGUCCGCCAACGACGACCAACGCAUUCGAUAUUGGAAAAUAUCGUUAUGGAAAAC---- .(((---..((((.....)))).........(((....---------......((((((..((((((....))..))))..)))))).((((((....))))))))))))......---- ( -22.00) >consensus ACAU___UAGAUUAUGCAAGUCAAACAAAUAAACGAAA_________UAAAUCAAUGCGCGGGUCCGCCGACGACGACCAACGCAUUCGAUAUUGGAAAAUAUCGUUAUGGAAAAC____ ...................................................((((((((..((((..........))))..))))))(((((((....))))))).....))........ (-16.00 = -17.44 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:28 2006