Locus 7698

Sequence ID 3L_DroMel_CAF1
Location 20,599,274 – 20,599,372
Length 98
Max. P 0.573621
window12516

overview

Window 6

Location 20,599,274 – 20,599,372
Length 98
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.18
Mean single sequence MFE -24.84
Consensus MFE -15.32
Energy contribution -16.16
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -1.97
Structure conservation index 0.62
SVM decision value 0.08
SVM RNA-class probability 0.573621
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20599274 98 - 23771897
AGCUUUCCCAAAAACUUUGGGACUCCC---------------AUCGAUUGGAUGCCCAGUC------ACAGGAAAUGAAGCAUAAAAAAUGCAUGUGGAAAUAUU-UUUGUCAUGCCAUU
.((((((((((.....)))))).(((.---------------...((((((....))))))------...)))....)))).........((((((..((....)-)..).))))).... ( -25.10)
>DroSec_CAF1 44003 98 - 1
AGCUUUCCCAAAAACUUUGGGACUCCC---------------AUCGAUUGGAUGCCCAGUC------ACAGGAAAUGAAGCAUAAAAAAUGCAUGUGGAAAUAUU-UUUGUCAUGCCAUU
.((((((((((.....)))))).(((.---------------...((((((....))))))------...)))....)))).........((((((..((....)-)..).))))).... ( -25.10)
>DroAna_CAF1 66267 117 - 1
AGCUUUCCCA---GCUUUGGGACCUCCACCUACCCACCUACGAUCGAUGGGAUGUCCAGCAACAGCAACAGGAAAUGAAGCAUAAAAAAUGCAUGUUCAAAUAUUUUUUGUCAUCGCAUU
.((((((((.---.....))))..(((.....((((.(.......).)))).......((....))....)))....))))......((((((((..((((.....)))).))).))))) ( -25.60)
>DroSim_CAF1 37441 98 - 1
AGCUUUCCCAAAAACUUUGGGACUCCC---------------AUCGAUUGGAUGCCCAGUC------ACAGGAAAUGAAGCAUAAAAAAUGCAUGUGGAAAUAUU-UUUGUCAUGCCAUU
.((((((((((.....)))))).(((.---------------...((((((....))))))------...)))....)))).........((((((..((....)-)..).))))).... ( -25.10)
>DroEre_CAF1 36588 98 - 1
AGCUUUCCUAAAAACUUUGGGACUCCC---------------AUCGCUUGGAUAUCCAGCC------ACAGGAAAUGAAGCAUAAAAAAUGCAUGUAGAAAUAUA-UUUGUCAUGGCAUU
.((((((((........((((...)))---------------)..(((.((....))))).------..)))))((((.((((.....))))(((((....))))-)...)))))))... ( -23.30)
>consensus
AGCUUUCCCAAAAACUUUGGGACUCCC_______________AUCGAUUGGAUGCCCAGUC______ACAGGAAAUGAAGCAUAAAAAAUGCAUGUGGAAAUAUU_UUUGUCAUGCCAUU
.....((((((.....)))))).......................((((((....))))))..........(..((((.((((.....))))((((....))))......))))..)... (-15.32 = -16.16 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:13 2006