Locus 7696

Sequence ID 3L_DroMel_CAF1
Location 20,597,926 – 20,598,039
Length 113
Max. P 0.996475
window12513

overview

Window 3

Location 20,597,926 – 20,598,039
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.66
Mean single sequence MFE -24.16
Consensus MFE -19.42
Energy contribution -20.42
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -3.06
Structure conservation index 0.80
SVM decision value 2.70
SVM RNA-class probability 0.996475
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20597926 113 - 23771897
---ACACACACAAAAAUUAUCAACAAACUGAUUGCCAAAGCAAACAGUGGGCACCGAAAAUAAGCAACCAAAGACGAGGCAUACUUAACACUUUUUGGAGCCCAACCAACGA----GAUC
---...............(((.....((((.((((....)))).))))((((.(((((((((((...((........))....))))....))))))).)))).........----))). ( -24.40)
>DroSec_CAF1 42655 113 - 1
---ACACACACGAAAAUUAUCAACAAACUGAUUGCCAAAGCAAACAGUUGGCACCGAAAUUAAGUAUCCAAAGACGAGGCAUACUUAACACUUUUUGGAGCCCAACCAACGA----GAUC
---.......((.............(((((.((((....)))).)))))(((.((((((((((((((((........)).))))))))....)))))).))).......)).----.... ( -27.40)
>DroAna_CAF1 65020 120 - 1
ACAACACACACGAAAAUUAUCAACAAACUGAUUGCCAACGCAAACAGUGAAGACCGAAAAUAAGUAACCGAAGACGAGGCAUACUUAACACUUUUUGGAGCCCAACCAACAACUAACAGC
..........................((((.((((....)))).)))).....(((((((((((((.((........))..))))))....)))))))...................... ( -18.00)
>DroSim_CAF1 36096 113 - 1
---ACACACACGAAAAUUAUCAACAAACUGAUUGCCAAAGCAAACAGUGGGCACCGAAAAUAAGCAACCAAAGACGAGGCAUACUUAACACUUUUUGGAGCCCAACCAACGA----GAUC
---.......((..............((((.((((....)))).))))((((.(((((((((((...((........))....))))....))))))).))))......)).----.... ( -24.80)
>DroEre_CAF1 35295 113 - 1
---ACACACACGAAAAUUAUCAACAAACUGAUUGCCAAAGCAAACAGUGGGCACCGAAAAUAAGCAACCUAAGACGAGGCAUACUUAACACUUUUUGGAGCCCAACCAACGA----GAUC
---.......((..............((((.((((....)))).))))((((.(((((((((((...(((......)))....))))....))))))).))))......)).----.... ( -26.20)
>consensus
___ACACACACGAAAAUUAUCAACAAACUGAUUGCCAAAGCAAACAGUGGGCACCGAAAAUAAGCAACCAAAGACGAGGCAUACUUAACACUUUUUGGAGCCCAACCAACGA____GAUC
..........................((((.((((....)))).))))((((.(((((((((((...((........))....))))....))))))).))))................. (-19.42 = -20.42 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:10 2006