Locus 7695

Sequence ID 3L_DroMel_CAF1
Location 20,597,096 – 20,597,190
Length 94
Max. P 0.984196
window12512

overview

Window 2

Location 20,597,096 – 20,597,190
Length 94
Sequences 4
Columns 94
Reading direction forward
Mean pairwise identity 92.20
Mean single sequence MFE -28.30
Consensus MFE -24.75
Energy contribution -26.25
Covariance contribution 1.50
Combinations/Pair 1.09
Mean z-score -2.68
Structure conservation index 0.87
SVM decision value 1.97
SVM RNA-class probability 0.984196
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20597096 94 + 23771897
UUUCUAUAUCUAUUUGCUAUGGGUAUAUGGUAUAUGGGUAUAGUUAUUGCCUUUGCCUUAGCUGGCUGGCUGGGAAGGUGUGGUAAAGUGAGGU
...((((((((((.(((((((....))))))).))))))))))((((..(((((.(((.((((....))))))))))).)..))))........ ( -31.10)
>DroSec_CAF1 41831 94 + 1
CUUCUAUAUCUACUUGCUUUGGGUACAUGGUAUAUGGGUAUAGUUAUUGCCUUUGCCUUAGCUGGCUGGCUGGGAAGGUGUGGUAAAGUGAGGU
...(((((((((..((((.((....)).))))..)))))))))((((..(((((.(((.((((....))))))))))).)..))))........ ( -28.90)
>DroSim_CAF1 35269 94 + 1
UUUCUAUAUCUACUUGCUAUGGGUAUAUGGUAUAUGGGUAUAGUUAUUGCCUUUGCCUUAGCUGGCUGGUUGGGAAGGUGUGGUAAAGUGAGGU
...(((((((((..(((((((....)))))))..)))))))))...(((((..((((((..(..(....)..).)))))).)))))........ ( -27.70)
>DroEre_CAF1 34469 87 + 1
UUUCUAUAUCUGCUCGCUAUGGGU-------AUAUGGGUAUAGUUAUUGCCUUUGCCUUAGCUGGCUGGCUGGGAAGGUGUGGUAAAGCGAGGU
...((((((((.(((((((.((((-------(...(((((.......))))).))))))))).((....))))).))))))))........... ( -25.50)
>consensus
UUUCUAUAUCUACUUGCUAUGGGUAUAUGGUAUAUGGGUAUAGUUAUUGCCUUUGCCUUAGCUGGCUGGCUGGGAAGGUGUGGUAAAGUGAGGU
...(((((((((..(((((((....)))))))..)))))))))((((..(((((.(((.((((....))))))))))).)..))))........ (-24.75 = -26.25 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:09 2006