Locus 7693

Sequence ID 3L_DroMel_CAF1
Location 20,593,000 – 20,593,107
Length 107
Max. P 0.994232
window12507 window12508

overview

Window 7

Location 20,593,000 – 20,593,107
Length 107
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.16
Mean single sequence MFE -33.84
Consensus MFE -32.38
Energy contribution -32.22
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -1.71
Structure conservation index 0.96
SVM decision value 2.46
SVM RNA-class probability 0.994232
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20593000 107 + 23771897
-----GGCUG--------CUGCAUUGUGACCACUCAUCUUGUCGGCUAUAAAUGUCCAAAUGAGUUUCUGCCCAUCAUCGAGCCGCUUUACGGCGGCAUUCAGUCUUGCGGUCACUUUGU
-----.....--------..(((..((((((((((((.(((..(((.......))))))))))))................((((((....))))))............))))))..))) ( -32.00)
>DroSec_CAF1 37673 107 + 1
-----GGCUG--------CUGCAUUGUGACCACUCAUCUUGUCGGCUAUAAAUGUCCAAAUGAGUUUCUGCCCAUCAUCGAGCCGCUUUACGGCGGCAUUCAGUCUUGCGGUCACUUUGU
-----.....--------..(((..((((((((((((.(((..(((.......))))))))))))................((((((....))))))............))))))..))) ( -32.00)
>DroAna_CAF1 60789 112 + 1
GCUCCAGCUU--------CAGCAUUGUGACCACUCAUCUUGUCGGCUAUAAAUGUCCAAAUGAGUUUCUGCCCAUCAUCGAGCCGCUUUACGGCGGCAUUCUGUUUUGUGGUCACUUUGC
((....))..--------..(((..((((((((((((.(((..(((.......))))))))))..................((((((....))))))..........))))))))..))) ( -33.80)
>DroSim_CAF1 31162 107 + 1
-----GGCUG--------CUGCAUUGUGACCACUCAUCUUGUCGGCUAUAAAUGUCCAAAUGAGUUUCUGCCCAUCAUCGAGCCGCUUUACGGCGGCAUUCAGUCUUGCGGUCACUUUGU
-----.....--------..(((..((((((((((((.(((..(((.......))))))))))))................((((((....))))))............))))))..))) ( -32.00)
>DroEre_CAF1 30837 115 + 1
-----GGCUGCAAUGCCGCUGCAUUGUGACCACUCAUCUUGGCGGCUAUAAAUGUCCAAAUGAGUUUCUGCCCAUCACCGAGCCGCUUUACGGCGGCAUUCAGUCUUGCGGUCACUUUGU
-----(((......)))...(((..((((((((((((.((((((........)).)))))))))).......((..((.((((((((....))))))..)).))..)).))))))..))) ( -39.40)
>consensus
_____GGCUG________CUGCAUUGUGACCACUCAUCUUGUCGGCUAUAAAUGUCCAAAUGAGUUUCUGCCCAUCAUCGAGCCGCUUUACGGCGGCAUUCAGUCUUGCGGUCACUUUGU
....................(((..((((((((((((.(((..(((.......))))))))))))................((((((....))))))............))))))..))) (-32.38 = -32.22 +  -0.16)

alignment

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secondary structure

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dotplot

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Window 8

Location 20,593,000 – 20,593,107
Length 107
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.16
Mean single sequence MFE -32.90
Consensus MFE -30.40
Energy contribution -30.44
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.40
Structure conservation index 0.92
SVM decision value 1.11
SVM RNA-class probability 0.916211
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20593000 107 - 23771897
ACAAAGUGACCGCAAGACUGAAUGCCGCCGUAAAGCGGCUCGAUGAUGGGCAGAAACUCAUUUGGACAUUUAUAGCCGACAAGAUGAGUGGUCACAAUGCAG--------CAGCC-----
.....((((((((.....((((((((((((.....)))).....((((((......)))))).)).))))))....(.....)....))))))))...((..--------..)).----- ( -30.80)
>DroSec_CAF1 37673 107 - 1
ACAAAGUGACCGCAAGACUGAAUGCCGCCGUAAAGCGGCUCGAUGAUGGGCAGAAACUCAUUUGGACAUUUAUAGCCGACAAGAUGAGUGGUCACAAUGCAG--------CAGCC-----
.....((((((((.....((((((((((((.....)))).....((((((......)))))).)).))))))....(.....)....))))))))...((..--------..)).----- ( -30.80)
>DroAna_CAF1 60789 112 - 1
GCAAAGUGACCACAAAACAGAAUGCCGCCGUAAAGCGGCUCGAUGAUGGGCAGAAACUCAUUUGGACAUUUAUAGCCGACAAGAUGAGUGGUCACAAUGCUG--------AAGCUGGAGC
(((..((((((((......(((((((((((.....)))).....((((((......)))))).)).))))).....(.....)....))))))))..)))..--------.......... ( -33.20)
>DroSim_CAF1 31162 107 - 1
ACAAAGUGACCGCAAGACUGAAUGCCGCCGUAAAGCGGCUCGAUGAUGGGCAGAAACUCAUUUGGACAUUUAUAGCCGACAAGAUGAGUGGUCACAAUGCAG--------CAGCC-----
.....((((((((.....((((((((((((.....)))).....((((((......)))))).)).))))))....(.....)....))))))))...((..--------..)).----- ( -30.80)
>DroEre_CAF1 30837 115 - 1
ACAAAGUGACCGCAAGACUGAAUGCCGCCGUAAAGCGGCUCGGUGAUGGGCAGAAACUCAUUUGGACAUUUAUAGCCGCCAAGAUGAGUGGUCACAAUGCAGCGGCAUUGCAGCC-----
.....((((((((...(((((..(((((......)))))))))).....))....((((((((((.(..........))).))))))))))))))(((((....)))))......----- ( -38.90)
>consensus
ACAAAGUGACCGCAAGACUGAAUGCCGCCGUAAAGCGGCUCGAUGAUGGGCAGAAACUCAUUUGGACAUUUAUAGCCGACAAGAUGAGUGGUCACAAUGCAG________CAGCC_____
.....((((((((.....((((((((((((.....)))).....((((((......)))))).)).))))))....(.....)....))))))))......................... (-30.40 = -30.44 +   0.04)

alignment

Postscript

secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:05 2006