Locus 7690

Sequence ID 3L_DroMel_CAF1
Location 20,588,721 – 20,588,841
Length 120
Max. P 0.997842
window12498

overview

Window 8

Location 20,588,721 – 20,588,841
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.25
Mean single sequence MFE -33.26
Consensus MFE -29.92
Energy contribution -30.20
Covariance contribution 0.28
Combinations/Pair 1.06
Mean z-score -2.09
Structure conservation index 0.90
SVM decision value 2.94
SVM RNA-class probability 0.997842
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20588721 120 + 23771897
CGAGGCCCACAAUCUUGGAUGCAAGUCUCAAAAACUUGUAAAGAAUUGCAGCAAUUUUCUUCUUGUUAAGCAAACGUCACAAACAAACCGCCCGCAAUUGUUUGUGGCGGCUGCCAAGUC
.............((((..(((((((.......))))))).......(((((..........(((.....))).((((((((((((...(....)..))))))))))))))))))))).. ( -32.80)
>DroSec_CAF1 33473 120 + 1
CGAGGCCCACAAUCUUGGAUGCAAGUCUCAAAAACUUGUAAAGAAUUGCAGCAAUUUUCUUCUUGUUAAGCAAACGUCACAAACAAACCGCCCGCAAUUGUUUGUGGCGGCUGCCAAGUC
.............((((..(((((((.......))))))).......(((((..........(((.....))).((((((((((((...(....)..))))))))))))))))))))).. ( -32.80)
>DroAna_CAF1 54872 117 + 1
GGAGU-CCGCAAUCUUG-CUGCAAGUCUCAAAAACUUGUAAAGAAUUGCAGCAAUUUUCUUCUUGUUAAGCAAACGUCACAAACAAACCGCCCGCAAUUGUUUGUGGCGGCUUGUAACC-
((((.-....((..(((-((((((.((((((....)))...))).)))))))))..)))))).......((((.((((((((((((...(....)..))))))))))))..))))....- ( -33.30)
>DroSim_CAF1 26969 120 + 1
CGAGGCCCACAAUCUUGGAUGCAAGUCUCAAAAACUUGUAAAGAAUUGCAGCAAUUUUCUUCUUGUUAAGCAAACGUCACAAACAAACCGCCCGCAAUUGUUUGUGGCGGCUGCCAAGUC
.............((((..(((((((.......))))))).......(((((..........(((.....))).((((((((((((...(....)..))))))))))))))))))))).. ( -32.80)
>DroEre_CAF1 26559 117 + 1
GGAGGCC---AAUCUUGGAUGCAAGUCUCAGAAGCUUGUAAAGAAUUGCAGCAAUUUUCUUCUUGUUAAGCAAACGUCACAAACAAACCGCCCGCAAUUGUUUGUGGCGGCUGCCAAGUC
((.((((---..((((...(((((((.......))))))))))).(((((((((........)))))..))))..(((((((((((...(....)..))))))))))))))).))..... ( -34.60)
>consensus
CGAGGCCCACAAUCUUGGAUGCAAGUCUCAAAAACUUGUAAAGAAUUGCAGCAAUUUUCUUCUUGUUAAGCAAACGUCACAAACAAACCGCCCGCAAUUGUUUGUGGCGGCUGCCAAGUC
.............((((..(((((((.......))))))).......(((((..........(((.....))).((((((((((((...(....)..))))))))))))))))))))).. (-29.92 = -30.20 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:56 2006