| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,307,142 – 2,307,233 |
| Length | 91 |
| Max. P | 0.956053 |
| Location | 2,307,142 – 2,307,233 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 75.20 |
| Mean single sequence MFE | -23.91 |
| Consensus MFE | -13.61 |
| Energy contribution | -13.83 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.956053 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2307142 91 + 23771897 GUUAAAUGUCAAAUUGGGG------------------------CACCGAUAAAAUAAAG-CCCGAUCAAGUGGCUCUCAUAAAUUGUGAGAAACUUAAAGUCACUCGAAGUAGACU .......(((......(((------------------------(..............)-)))..((.((((((((((((.....))))))........)))))).))....))). ( -21.84) >DroSec_CAF1 56333 91 + 1 GUUAAAUGGCAAAUUGGGGA-----------------------UAAAUAU-AAAUAAAG-CCCGAUCGAGUGGCUCUCAUAAAUUGUGAGAAACUUAAAGCUACUCGAAGGAGACU .............(((((..-----------------------.......-........-)))))(((((((((((((((.....))))))........)))))))))((....)) ( -24.43) >DroSim_CAF1 56282 90 + 1 GUUAAAUGUCAAAUUGGGG------------------------CACCGAU-AAAUAAAG-CCCGAUCGAGUGGCUCUCAUAAAUUGUGAGAAACUUAAAGCUACUCGAAGGAGACU .......(((..(((((..------------------------..)))))-........-.((..(((((((((((((((.....))))))........))))))))).)).))). ( -28.50) >DroEre_CAF1 59585 88 + 1 GUUAAAUGGCAAAUUG--G------------------------UUCCGAU-AAAUAAAA-CCCGAUCGAGUGGCUCUCAUAAAUUGGCAGAAACUUAAAGCCACUCAAAGGAGACU ................--.------------------------(((((((-........-....)))((((((((.......................))))))))...))))... ( -15.90) >DroYak_CAF1 59024 90 + 1 AUUAAAUAGGAAAUUGGGG------------------------UUCCGAC-AAAUAAAA-CUCGAUCAAGUGGCUCUUAUAAAUUGUGAGAAACUUAAAGUUACUCGAGGGAGACC ........((((.......------------------------))))...-........-(((..((.((((((((((((.....))))))........)))))).))..)))... ( -16.00) >DroAna_CAF1 54418 115 + 1 AUUAAAUGGGGAAGUGGGGAGCCUGAAGUGGGAAGAGCCUGAUUUCCCCG-AAAUCAAGUCCUGAUCGAGUGGCUCUCAUAAAUUUAGAAAAAGUUUCAGCUGCUCGGAGGUAUCU ......(((((((((.(((..(((.....))).....))).)))))))))-.........(((..(((((..(((.....((((((.....)))))).)))..))))))))..... ( -36.80) >consensus GUUAAAUGGCAAAUUGGGG________________________UACCGAU_AAAUAAAG_CCCGAUCGAGUGGCUCUCAUAAAUUGUGAGAAACUUAAAGCUACUCGAAGGAGACU .................................................................(((((((((((((((.....)))))........))))))))))((....)) (-13.61 = -13.83 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:46 2006