Locus 7687

Sequence ID 3L_DroMel_CAF1
Location 20,586,706 – 20,586,820
Length 114
Max. P 0.664739
window12491

overview

Window 1

Location 20,586,706 – 20,586,820
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.06
Mean single sequence MFE -27.16
Consensus MFE -25.78
Energy contribution -26.22
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -1.17
Structure conservation index 0.95
SVM decision value 0.28
SVM RNA-class probability 0.664739
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20586706 114 + 23771897
AAAAGUGGGUGGAAUAAUGGGCGGCUAUGCGAAUUUACUCAGUGCAUGAUUAUAGCGUAGAUUACAAAAAGUGCGCUCCAGAGCUCUACCCCAAAA------AAACAGCAAGCCGAACAA
....(.(((((((....((((((.((((((.....((.(((.....))).))..))))))..(((.....)))))).)))....))))))))....------.................. ( -27.90)
>DroSec_CAF1 31464 113 + 1
AAAAGUGGGUGGAAUAAUGGGCGGCUAUGCGAAUUUACUCAGUGCAUGAUUAUAGCGUAGAUUACAAAAAGUGCGCUCCAGAGCUCUACCCCAAA-------AAACAGCAAGCCGAACAA
....(.(((((((....((((((.((((((.....((.(((.....))).))..))))))..(((.....)))))).)))....))))))))...-------.................. ( -27.90)
>DroAna_CAF1 52903 103 + 1
AAAAGUGGGUGGAAUAAUGGGCGGCUAUGCGAAUUUACUCAGUGCAUGAUUAUAGCGUAGAUUACAAAAAGUGCGCUC-UGAGCUCAGCCCCAAAA------UAACAACA----------
....(.((((.((.....(((((.((((((.....((.(((.....))).))..))))))..(((.....))))))))-.....)).)))))....------........---------- ( -22.80)
>DroSim_CAF1 25020 113 + 1
AAAAGUGGGUGGAAUAAUGGGCGGCUAUGCGAAUUUACUCAGUGCAUGAUUAUAGCGUAGAUUACAAAAAGUGCGCUCCAGAGCUCUACCCCAAA-------AAACAGCAAGCCGAACAA
....(.(((((((....((((((.((((((.....((.(((.....))).))..))))))..(((.....)))))).)))....))))))))...-------.................. ( -27.90)
>DroEre_CAF1 24581 120 + 1
AAAAGUGGGUGGAAUAAUGGGCGGCUAUGCGAAUUUACUCAGUGCAUGAUUAUAGCGUAGAUUACAAAAAGUGCGCUCCAGAGCUCUACCCCAAAAACAGCAAAACAGCGAGCCAAACAG
....(.(((((((....((((((.((((((.....((.(((.....))).))..))))))..(((.....)))))).)))....)))))))).......((......))........... ( -29.30)
>consensus
AAAAGUGGGUGGAAUAAUGGGCGGCUAUGCGAAUUUACUCAGUGCAUGAUUAUAGCGUAGAUUACAAAAAGUGCGCUCCAGAGCUCUACCCCAAAA______AAACAGCAAGCCGAACAA
....(.(((((((....((((((.((((((.....((.(((.....))).))..))))))..(((.....)))))).)))....))))))))............................ (-25.78 = -26.22 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:49 2006